PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.010G035300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 626aa MW: 65395.4 Da PI: 7.2676 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.7 | 6.3e-30 | 264 | 323 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt gCpv+k+v+r+a+d +++++tYeg+Hnh+ Sobic.010G035300.2.p 264 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVGaGCPVRKQVQRCADDMSILITTYEGTHNHP 323 58***************************88****************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.8E-32 | 249 | 323 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-27 | 257 | 324 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.197 | 259 | 325 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 264 | 324 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.0E-27 | 265 | 323 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 626 aa Download sequence Send to blast |
MIGTRIRETY SAANSDVEIN QIKDDDHILD GNLFKSLHES SSRKEASSSS LRERSETDEA 60 SNQTSANHNK VDKDKLASTR AEMGEVREEN KRLKTMLSRI VEDYRSLQLH FHDVLQKGQA 120 KKLADPSTIM PTGIEEPEFV SLSLGTTTSM HRKEDKNSAA EGKGREDFMS IKEEGLSLGL 180 SACKDGATNN NVKIQPEVMT LSPEVSSEDA KDDAMEAADQ QWPPSKAEKS LRNVGTGPED 240 DIGPLPQAKK ARVSVRARCD APTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVGAGCPVRK 300 QVQRCADDMS ILITTYEGTH NHPLSASATA MATTTSAAAS MLTSGSSTSL RFPAASPAAA 360 GLSFGFPPAA AHDPSKHFFL PNGGAASITS TPSYPTITLD LTSPAATSQA FSLGNRFSSS 420 LVHGGARYHH PTSLSFSNSG PSALSGAAWP AAGGAGYLSY GSPAASLFNG GAALSSINGR 480 QQGGEFPVLY QPQQKASAAA SGSAPEGVLT DTIAKVITSD PSFQTVLAAA ITSYVGTQGG 540 NRSSAGGEGG SQLQGLKWGQ HLGLGPSPSS PGAACSSALL ARSSSTTAAA VVEQGSNGHR 600 SFLQPSLGLS GSHSTSTSPV ENREH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 264 | 326 | 17 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 264 | 326 | 17 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.010G035300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436468.2 | 0.0 | probable WRKY transcription factor 61 | ||||
TrEMBL | A0A1W0VRB1 | 0.0 | A0A1W0VRB1_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Db02233.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5047 | 38 | 62 |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G15130.1 | 3e-60 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.010G035300.2.p |