PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G035300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 623aa    MW: 65086.1 Da    PI: 7.6604
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G035300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.3e-30261320159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK  kg+++pr+YYrCt   gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Sobic.010G035300.1.p 261 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVGaGCPVRKQVQRCADDMSILITTYEGTHNHP 320
                           58***************************88****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-32246320IPR003657WRKY domain
SuperFamilySSF1182902.35E-27254321IPR003657WRKY domain
PROSITE profilePS5081128.197256322IPR003657WRKY domain
SMARTSM007741.4E-36261321IPR003657WRKY domain
PfamPF031066.9E-27262320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MVRGEKRSGS HEEQLTSKIK DDDHILDGNL FKSLHESSSR KEASSSSLRE RSETDEASNQ  60
TSANHNKVDK DKLASTRAEM GEVREENKRL KTMLSRIVED YRSLQLHFHD VLQKGQAKKL  120
ADPSTIMPTG IEEPEFVSLS LGTTTSMHRK EDKNSAAEGK GREDFMSIKE EGLSLGLSAC  180
KDGATNNNVK IQPEVMTLSP EVSSEDAKDD AMEAADQQWP PSKAEKSLRN VGTGPEDDIG  240
PLPQAKKARV SVRARCDAPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVG AGCPVRKQVQ  300
RCADDMSILI TTYEGTHNHP LSASATAMAT TTSAAASMLT SGSSTSLRFP AASPAAAGLS  360
FGFPPAAAHD PSKHFFLPNG GAASITSTPS YPTITLDLTS PAATSQAFSL GNRFSSSLVH  420
GGARYHHPTS LSFSNSGPSA LSGAAWPAAG GAGYLSYGSP AASLFNGGAA LSSINGRQQG  480
GEFPVLYQPQ QKASAAASGS APEGVLTDTI AKVITSDPSF QTVLAAAITS YVGTQGGNRS  540
SAGGEGGSQL QGLKWGQHLG LGPSPSSPGA ACSSALLARS SSTTAAAVVE QGSNGHRSFL  600
QPSLGLSGSH STSTSPVENR EH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-202613231778Probable WRKY transcription factor 4
2lex_A2e-202613231778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G035300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436468.20.0probable WRKY transcription factor 61
TrEMBLA0A194YH430.0A0A194YH43_SORBI; Uncharacterized protein
STRINGPavir.Db02233.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-60WRKY DNA-binding protein 72