PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G035300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 623aa MW: 65086.1 Da PI: 7.6604 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 6.3e-30 | 261 | 320 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt gCpv+k+v+r+a+d +++++tYeg+Hnh+ Sobic.010G035300.1.p 261 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVGaGCPVRKQVQRCADDMSILITTYEGTHNHP 320 58***************************88****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.7E-32 | 246 | 320 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-27 | 254 | 321 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.197 | 256 | 322 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 261 | 321 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.9E-27 | 262 | 320 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006952 | Biological Process | defense response | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 623 aa Download sequence Send to blast |
MVRGEKRSGS HEEQLTSKIK DDDHILDGNL FKSLHESSSR KEASSSSLRE RSETDEASNQ 60 TSANHNKVDK DKLASTRAEM GEVREENKRL KTMLSRIVED YRSLQLHFHD VLQKGQAKKL 120 ADPSTIMPTG IEEPEFVSLS LGTTTSMHRK EDKNSAAEGK GREDFMSIKE EGLSLGLSAC 180 KDGATNNNVK IQPEVMTLSP EVSSEDAKDD AMEAADQQWP PSKAEKSLRN VGTGPEDDIG 240 PLPQAKKARV SVRARCDAPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVG AGCPVRKQVQ 300 RCADDMSILI TTYEGTHNHP LSASATAMAT TTSAAASMLT SGSSTSLRFP AASPAAAGLS 360 FGFPPAAAHD PSKHFFLPNG GAASITSTPS YPTITLDLTS PAATSQAFSL GNRFSSSLVH 420 GGARYHHPTS LSFSNSGPSA LSGAAWPAAG GAGYLSYGSP AASLFNGGAA LSSINGRQQG 480 GEFPVLYQPQ QKASAAASGS APEGVLTDTI AKVITSDPSF QTVLAAAITS YVGTQGGNRS 540 SAGGEGGSQL QGLKWGQHLG LGPSPSSPGA ACSSALLARS SSTTAAAVVE QGSNGHRSFL 600 QPSLGLSGSH STSTSPVENR EH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-20 | 261 | 323 | 17 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-20 | 261 | 323 | 17 | 78 | Probable WRKY transcription factor 4 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G035300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436468.2 | 0.0 | probable WRKY transcription factor 61 | ||||
TrEMBL | A0A194YH43 | 0.0 | A0A194YH43_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Db02233.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 3e-60 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G035300.1.p |