 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sobic.010G030200.1.p |
| Common Name | Sb10g002750, SORBIDRAFT_10g002750 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 319aa MW: 33412.5 Da PI: 9.8441 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.010G030200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 59.8 | 4.3e-19 | 127 | 181 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee+F+ +++++ +++ LA++lgL rqV vWFqNrRa+ k
Sobic.010G030200.1.p 127 RKKLRLSKDQAAVLEECFKTHSTLNPKQKLALATRLGLRPRQVEVWFQNRRARTK 181
678899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 123.4 | 1e-39 | 127 | 217 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+kk+rlsk+q+++LEe+F+++++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr
Sobic.010G030200.1.p 127 RKKLRLSKDQAAVLEECFKTHSTLNPKQKLALATRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR- 214
69*************************************************************************************9. PP
HD-ZIP_I/II 90 elk 92
+lk
Sobic.010G030200.1.p 215 ALK 217
555 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MMPRTSLDLG LSLGLSLTSQ GSLSSSTTTA GSSSPWAAAL SSVVADVAKA RDAGAHMLYH 60
ASASAAALDR AAMRASTSPD SAAALSSGGS GDNTTGTKRE RETELERTGS GGVRSDEEDG 120
VDGAGGRKKL RLSKDQAAVL EECFKTHSTL NPKQKLALAT RLGLRPRQVE VWFQNRRART 180
KLKQTEVDCE YLKRWCERLA DENKRLEKEL ADLRALKAAP SPAAAQPASP AATLTMCPSC 240
RRVAATATAA ASPTKHHHHQ QQQCHPKPSS SLTPAAAAAA GGAGSVVPSH CQFFPAAVDR 300
TSQSTWSTAA PLVTRELF*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 175 | 183 | RRARTKLKQ |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, nodes, internodes, flowers and embryo. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:17999151}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP093288 | 1e-137 | FP093288.1 Phyllostachys edulis cDNA clone: bphylf053m07, full insert sequence. |
