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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.010G008000.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
MYB |
Protein Properties |
Length: 390aa MW: 40700.6 Da PI: 6.5046 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.010G008000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 61.3 | 2e-19 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd+llvd+++++G g+W++ ++ g++R++k+c++rw +yl
Sobic.010G008000.1.p 15 KGPWTPEEDKLLVDYINEHGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
79********************************************97 PP
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2 | Myb_DNA-binding | 56.7 | 5.6e-18 | 68 | 113 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgr+T +E++l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
Sobic.010G008000.1.p 68 RGRFTDDEEKLIIHLHSLLGNK-WSSIATKLP-GRTDNEIKNYWNTHL 113
89********************.*********.************996 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MGRSPCCDQD AGVKKGPWTP EEDKLLVDYI NEHGHGSWRR LPKLAGLNRC GKSCRLRWTN 60 YLRPDIKRGR FTDDEEKLII HLHSLLGNKW SSIATKLPGR TDNEIKNYWN THLRKKLLSM 120 GIDPVTHQRR TDLNLLAAGG FTNLLAAANL AAAAGGGGPA GTGPLAAAAQ ASCWDINALR 180 LQADAAKYQL LEGLVRVLTA PAAPTVDLMT LLAAANGGGA VSGGHHHQLL SGVDQQSTTT 240 ASRVVQQYDG MLSLPALTSV PAAVTTTQGM SSSAYSLSGL LNSFGGAGTT TNALAGDGLS 300 STELGHSGAT TGSNITAAAM PPPLAPAAEG CNAGNGVGTS STPSPCEETP ASSPFDGLDS 360 LTLDFDPNSD SWRELLEQMS WLNNPNDQL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ727665 | 0.0 | KJ727665.1 Zea mays clone pUT5592 MYB transcription factor (MYB148) gene, partial cds. |