PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G004300.1.p
Common NameSb10g000590, SORBIDRAFT_10g000590
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 318aa    MW: 34818.9 Da    PI: 6.5684
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G004300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.7e-1273117147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           r +WT  E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  Sobic.010G004300.1.p  73 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 117
                           789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.21E-1667123IPR009057Homeodomain-like
PROSITE profilePS5129414.23468122IPR017930Myb domain
TIGRFAMsTIGR015572.0E-1871120IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.609.8E-671123IPR009057Homeodomain-like
SMARTSM007177.1E-1072120IPR001005SANT/Myb domain
PfamPF002494.1E-1073117IPR001005SANT/Myb domain
CDDcd001672.00E-775118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVSMSTTPHP LDPSVPAVAG GGKEEEEEAG RAREEAAAAA AAPAAVPVPT VGNDDDDDGP  60
RRVRKPYTIT KSRESWTDPE HDKFLEALQL FDRDWKKIEA YVGSKTVIQI RSHAQKYFLK  120
VQKNGTGEHL PPPRPKRKAA HPYPHKASKK ALQVVLPQQA SHIMEQGCGT PMDTATVATD  180
SSANDAFPVQ HFSPRHTQGA TYNNSSSIGS QSGTWPTSEG TEQDIRHPAL SAMPDFARVY  240
NFLGSIFDPE TNGHLQQLKE MDPIDAETVL LLMKNLSINL TSPNFEEHRR LLSSHASSMD  300
QEMGSSHIHL PFMITSK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.3120.0ovary| shoot
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G004300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794510.0HF679451.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB45 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437676.10.0protein REVEILLE 6
SwissprotQ8H0W32e-90RVE6_ARATH; Protein REVEILLE 6
TrEMBLC5Z2550.0C5Z255_SORBI; Uncharacterized protein
STRINGSb10g000590.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.27e-77MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]