PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G239101.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 643aa    MW: 73660.1 Da    PI: 8.9646
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G239101.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.38.9e-1751130190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fYn Y+ e+GF +r+s+ +++  n+ +t+r++vC +eg+ ++   +         + r+gCka+l++++++++ w vtk+  +HnH+l
  Sobic.009G239101.1.p  51 EFYNLYSWEIGFGIRVSRARQN-GNECTTRRDLVCCCEGFCKNPLAA---------SFRIGCKAMLRLHRTESHGWIVTKIIPDHNHPL 129
                           6****************99998.77779************9998766.........99******************************9 PP

                  FAR1  90 a 90 
                           +
  Sobic.009G239101.1.p 130 S 130
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1351130IPR004330FAR1 DNA binding domain
PfamPF105515.7E-16235314IPR018289MULE transposase domain
PROSITE profilePS509669.866445483IPR007527Zinc finger, SWIM-type
PfamPF044347.2E-5454482IPR007527Zinc finger, SWIM-type
SMARTSM005755.1E-5458485IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MRAKEGPDEC LSFTGDSAVS RAIATSAERS GQPIFYPYQG TTFNSFEEAK EFYNLYSWEI  60
GFGIRVSRAR QNGNECTTRR DLVCCCEGFC KNPLAASFRI GCKAMLRLHR TESHGWIVTK  120
IIPDHNHPLS DSYGQKNQWG SHGAIDPLTK DFIKKLRENN VMLGRVCSII GVMSASTIAP  180
VRKQVVRNLC AKLAQEDIKD DIGKTMQVLE SMKREDKDMQ CTGKNQVDYK HFGDVVTFDT  240
TYRTNLYNLP FGIFVVLLRH ERTEDFEWAF SNFIEIMGGK QPQTILTDQC QAMAVAIKST  300
LKKSRHRWCR WHAEEISAIA FERRWGELLK EFKLESNKFM ARAYKFRGMW AKPYFMNIFC  360
AGMTSTQRSE SANHMLKRFI QRSAPMHVFV SKFRDFQFAR NQEEKENHVT KQVSRRRRIG  420
VPIEQHAETI YTRAMHERFY NELYESVHVV RLAGAEKVTC TCGLYEHVGL LCRHSLKVLV  480
HLDRTEIPPG NIMYRWTKHA GPEYSPCTRE LMMDQVSARV DGTKSHVKRA LEFAHGDDPI  540
DDEAFAEAMR AMDAIVPRKD HSVSSFREHG GEVKTSGPSL GNAESMPTGR PRNTSLKSWQ  600
KHEISVKKVS STERPDNILD INDEEGNIAA KTRKVDELMR MN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G239101.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021310926.10.0protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1Z5R4T40.0A0A1Z5R4T4_SORBI; Uncharacterized protein
STRINGSb08g016320.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-51FAR1-related sequence 5