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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.009G238200.1.p |
Common Name | Sb09g029050, SORBIDRAFT_09g029050 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 273aa MW: 29083.5 Da PI: 6.1549 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.009G238200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 79.7 | 3.2e-25 | 110 | 171 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
ldDg +WrKYGqK++ g+++pr+Y+rCt++ gC ++k+v+r++ dp + +++Y+g H++
Sobic.009G238200.1.p 110 LDDGLSWRKYGQKDILGAKYPRAYFRCTYRhsqGCLATKHVQRADGDPLLHDVVYHGAHTCA 171
58**************************998899**************************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 273 aa
Download sequence Send
to blast |
MDGYGSYGGE KSALASELAQ VLAMVRELEA RMDQDPLPAA ARELCAELAS SVDRSIRIAR 60 SCCVDSPASG SGSPRSDGGN AGAAQSKRRK GTPCVRRQLR AASVQDAAAL DDGLSWRKYG 120 QKDILGAKYP RAYFRCTYRH SQGCLATKHV QRADGDPLLH DVVYHGAHTC AQAAHPSAQQ 180 LRQELQLQPG HGAQEDQASP LALETEGLRA ALLEPMTPYS FATVAGAGAG ASAGADFAGW 240 CPLLSPTALD WQFEELFTNA MEPFQWDLYT AN*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KU058619 | 1e-102 | KU058619.1 UNVERIFIED: Panicum miliaceum WRKY1-like gene, complete sequence. |