PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G234900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 632aa    MW: 65848.4 Da    PI: 7.0096
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G234900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30364422259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +vv++tYeg+Hnh+
  Sobic.009G234900.1.p 364 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVVITTYEGHHNHP 422
                           8***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-33348424IPR003657WRKY domain
SuperFamilySSF1182906.02E-28356424IPR003657WRKY domain
PROSITE profilePS5081130.136358424IPR003657WRKY domain
SMARTSM007747.5E-37363423IPR003657WRKY domain
PfamPF031062.3E-26364422IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MESSYLGKRR LNGGADRETT TARAPAASSF LPAAAMGYEY GDAAEAADHH HLPRRVAAGE  60
MDFFKKERKD AAAAAALAAF VPSSSDEHGI KEDDLTINMG LHHVSGRKSS IRSEESSVDD  120
GVSSNGVDHR ETKAELALAK SELGRLNEEN KQLKDMLSRM TIKFNAFQVQ MPVYTTLMQQ  180
QQQRTNNHQA LLRGAPGHEL MNVDPETKDH QEGSGGSHLL PRQFISSLGT APDDPLRSVG  240
SDAMHGGGNS SGSSTSNAEP PPPQPLDYCP GNGLMVSSKE MMPLPAFEHG HQQPQQHLAH  300
EMGSSSRADE PPQPHHLAAA QQGWLSNKVH KFLPSKGPEP VPEAATMRKA RVSVRARSEA  360
PMINDGCQWR KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDRTV VITTYEGHHN  420
HPLPPAAMPM ASTTAAAASM LLSGSMPSAD GGSLMAGSNF LARAVLPCSS NVATISASAP  480
FPTVTLDLTQ PPPGAASASA SAFAQPPASA PAQARATGTE PSQLQAALAD AAGRPMPLTT  540
QLFGQKLYDP SSKAPAAQAD AAGDTVSAAA VIASDPNFTA MLAAAIKSYI GSSGSGSNGA  600
GGSSGTTVLP PAGASSAGDS SRDDKVGEQG S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21350426176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G234900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1209862e-92AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence.
GenBankAP0149612e-92AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440265.20.0WRKY transcription factor 42
TrEMBLA0A1B6PA500.0A0A1B6PA50_SORBI; Uncharacterized protein
STRINGSb09g028750.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126952734
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.11e-69WRKY family protein