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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.009G234900.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 632aa MW: 65848.4 Da PI: 7.0096 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.009G234900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 96.3 | 2e-30 | 364 | 422 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +vv++tYeg+Hnh+
Sobic.009G234900.1.p 364 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVVITTYEGHHNHP 422
8***************************99****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 632 aa
Download sequence Send
to blast |
MESSYLGKRR LNGGADRETT TARAPAASSF LPAAAMGYEY GDAAEAADHH HLPRRVAAGE 60 MDFFKKERKD AAAAAALAAF VPSSSDEHGI KEDDLTINMG LHHVSGRKSS IRSEESSVDD 120 GVSSNGVDHR ETKAELALAK SELGRLNEEN KQLKDMLSRM TIKFNAFQVQ MPVYTTLMQQ 180 QQQRTNNHQA LLRGAPGHEL MNVDPETKDH QEGSGGSHLL PRQFISSLGT APDDPLRSVG 240 SDAMHGGGNS SGSSTSNAEP PPPQPLDYCP GNGLMVSSKE MMPLPAFEHG HQQPQQHLAH 300 EMGSSSRADE PPQPHHLAAA QQGWLSNKVH KFLPSKGPEP VPEAATMRKA RVSVRARSEA 360 PMINDGCQWR KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDRTV VITTYEGHHN 420 HPLPPAAMPM ASTTAAAASM LLSGSMPSAD GGSLMAGSNF LARAVLPCSS NVATISASAP 480 FPTVTLDLTQ PPPGAASASA SAFAQPPASA PAQARATGTE PSQLQAALAD AAGRPMPLTT 540 QLFGQKLYDP SSKAPAAQAD AAGDTVSAAA VIASDPNFTA MLAAAIKSYI GSSGSGSNGA 600 GGSSGTTVLP PAGASSAGDS SRDDKVGEQG S*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC120986 | 2e-92 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. |
GenBank | AP014961 | 2e-92 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |