PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G233000.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WOX
Protein Properties Length: 497aa    MW: 52008.7 Da    PI: 6.8474
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G233000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.92.6e-1651110256
                           T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
              Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56 
                           r+R+++ +eq+++Le  F++   +ps++e++++  +l     + +++V++WFqNr+ + k
  Sobic.009G233000.1.p  51 RPRWNPRPEQIRILEGIFNSgMVNPSRDEIRRIRLQLqeygPVGDANVFYWFQNRKSRTK 110
                           89*****************99****************99999****************99 PP
2Wus_type_Homeobox105.92.6e-3450112264
     Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                           +r+RW+P+peQi+iLe +++sG+++P+++ei+ri+ +L+eyG ++d+NVfyWFQNrk+R ++k
  Sobic.009G233000.1.p  50 PRPRWNPRPEQIRILEGIFNSGMVNPSRDEIRRIRLQLQEYGPVGDANVFYWFQNRKSRTKHK 112
                           689**********************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.46347112IPR001356Homeobox domain
SuperFamilySSF466892.67E-1248116IPR009057Homeodomain-like
SMARTSM003891.6E-749116IPR001356Homeobox domain
CDDcd000864.46E-850112No hitNo description
Gene3DG3DSA:1.10.10.602.9E-650111IPR009057Homeodomain-like
PfamPF000465.3E-1451111IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010075Biological Processregulation of meristem growth
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MASSNRHWPS MYRSSLACNF QQPQPDMNNG GKSSLMSSRC EENGGRNPEP RPRWNPRPEQ  60
IRILEGIFNS GMVNPSRDEI RRIRLQLQEY GPVGDANVFY WFQNRKSRTK HKLRAAGQLQ  120
PSARAALARA CAPPAPVTPP RHLQLAAAAP PPVAPTSSSS SSSDRSSGSS SKSVTPTTAV  180
ALASPVVVQG VIPTTAMDLL TPLPPSAAAL AARQLYYQYQ SQIMAPANAP PMPDLMIASP  240
EPLLPQWQQG EQHYLPATEL GGVLGGHTHT PHEPPAMHRA VSLSPSALFG MCNEALGQDY  300
ADISIVSKGL GHGQFWNNDT TCGSDLSNTK TDAVSAVIRD DEKARLGLFH YYGLAGATNA  360
AAAVASAPLA AAAAADASTA AMLLPSSAPS NAAAATSAAV LTDQLQGLLD AGLLIGETTP  420
PPTATVVAVA RDAVTCAATA TAQFSVPAMR LDVKLAFGEA AVLARQTGEA VPVDESGVTV  480
EPLQQDALYY VLMATN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G233000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9498960.0EU949896.1 Zea mays clone 451620 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440254.20.0WUSCHEL-related homeobox 12
SwissprotA3B6V01e-134WOX12_ORYSJ; WUSCHEL-related homeobox 12
TrEMBLA0A1B6PA400.0A0A1B6PA40_SORBI; Uncharacterized protein
STRINGSb09g028562.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26663470
Representative plantOGRP61031220
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.12e-32homeobox-3
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]