PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G231600.1.p
Common NameSb09g028430, SORBIDRAFT_09g028430
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 324aa    MW: 34647.9 Da    PI: 9.1247
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G231600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.94.9e-33622051128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                           lp+G++F+Ptd+el+ e+L+ k++ ++      +  +e+i+++d    i++++P++Lp  v+++    +fF++ +++y+tg+rk+r+  
  Sobic.009G231600.1.p  62 LPAGVKFDPTDQELL-EHLEGKARPDTrklhplV--DEFIPTIDgengICYTHPENLP-GVSKDGLVRHFFHRPSRAYTTGTRKRRKvh 146
                           799************.99****999886664332..233555544445**********.555666688******************845 PP

                   NAM  78 .......tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                    + +W++tgk+++vls +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Sobic.009G231600.1.p 147 sgdgddgGGETRWHKTGKTRPVLS-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 205
                           555554433677************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3953224IPR003441NAC domain
PROSITE profilePS5100532.81262224IPR003441NAC domain
PfamPF023651.5E-1463205IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MTWCNGFNDV RAAVESSLSP AAAAVGKKAA ASLAVLVKMC PSCGHRAQYE QESTTIQDLP  60
GLPAGVKFDP TDQELLEHLE GKARPDTRKL HPLVDEFIPT IDGENGICYT HPENLPGVSK  120
DGLVRHFFHR PSRAYTTGTR KRRKVHSGDG DDGGGETRWH KTGKTRPVLS NGRPRGYKKI  180
LVLYTNYGKQ RKPEKTNWVM HQYHLGSDEE ERDGELVVSK VFFQTQPRQC GSAMARQEAG  240
VVPAAAFTGS SDALIAVGHH QGGGGGGGLR EANGGVDQFY SPGAMMGYGQ GVPAGNRAPP  300
APAAAPHFMP NFAVHAARAS FGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-116120514140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G231600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0655440.0BT065544.2 Zea mays full-length cDNA clone ZM_BFb0229C22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440245.10.0NAC domain-containing protein 73
SwissprotO494591e-121NAC73_ARATH; NAC domain-containing protein 73
TrEMBLC5YVJ20.0C5YVJ2_SORBI; Uncharacterized protein
STRINGSb09g028430.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-117NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]