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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.009G230700.1.p |
Common Name | Sb09g028350, SORBIDRAFT_09g028350 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
Trihelix |
Protein Properties |
Length: 348aa MW: 37155.9 Da PI: 10.535 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.009G230700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 43 | 1.2e-13 | 42 | 128 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82
+W++ e+ aL++a ++ +l+rg+l++++W+ev++++ ++r r+ +qCk++ + l+k+yk++ +++ s +++f
Sobic.009G230700.1.p 42 CWSDGETAALVAAWGSRYVELNRGNLRQKQWQEVADAVnnrrgasARRRPPRTDVQCKNRVDTLKKKYKAELARNAP------SGWSFF 124
7******************************************9999999*********************999996......469999 PP
trihelix 83 dqle 86
+l+
Sobic.009G230700.1.p 125 PELD 128
9997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 348 aa
Download sequence Send
to blast |
MEVREMAMAA AAAAASVGGG GGGGGGVKLP PPNPNLPYRE DCWSDGETAA LVAAWGSRYV 60 ELNRGNLRQK QWQEVADAVN NRRGASARRR PPRTDVQCKN RVDTLKKKYK AELARNAPSG 120 WSFFPELDRL VGPTLSASAS KRPLASLPPQ FALPLHPPAV RRPPSPSPSS SSPPPPMALP 180 LPNYRRGSPL PAAALIQKEA AAAAAAVSDS EDSDDADGNN NHNSPRSPSR SLSSLSGSNK 240 KRSRDEASSS AEKGFRELAR AIEAFAEMYE RVESAKQKHA VEMERQRIEF LKQLEVKRME 300 NFVDAHVKLA RAKRTKKTTG GAADGAGAME LVATVAALPF VSTSTFL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT039806 | 0.0 | BT039806.1 Zea mays full-length cDNA clone ZM_BFc0045P15 mRNA, complete cds. |
GenBank | BT043387 | 0.0 | BT043387.2 Zea mays full-length cDNA clone ZM_BFc0175K05 mRNA, complete cds. |
GenBank | EU967122 | 0.0 | EU967122.1 Zea mays clone 299578 6b-interacting protein 1 mRNA, complete cds. |
GenBank | HQ858672 | 0.0 | HQ858672.1 Zea mays clone UT1108 Trihelix transcription factor mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G58630.1 | 7e-30 | sequence-specific DNA binding transcription factors |