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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G198100.1.p | ||||||||
Common Name | Sb09g025580, SORBIDRAFT_09g025580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | VOZ | ||||||||
Protein Properties | Length: 610aa MW: 66795.6 Da PI: 5.4133 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 414.7 | 1.7e-127 | 274 | 491 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataks 88 p+ps++lgpkcalwdc rp+ g+e+ dyc+ +ha laln+ gl+gt+pv+rpkgidlkdg+lfaal akvqgk+vgip+c gaat+ks Sobic.009G198100.1.p 274 PSPSQYLGPKCALWDCGRPVGGTEDSGDYCNPYHAGLALNDdGLLGTRPVMRPKGIDLKDGPLFAALIAKVQGKNVGIPVCGGAATSKS 362 89**************************************9799********************************************* PP VOZ 89 pwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeinel 177 pwna+elfdlsllege++rewlffd+prrafesgnrkqrslpdysgrgwhesrkqvmk+f+glkrsyymdpqpsss+ewhl+eyein + Sobic.009G198100.1.p 363 PWNAPELFDLSLLEGESLREWLFFDTPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKDFAGLKRSYYMDPQPSSSHEWHLFEYEINAS 451 ***************************************************************************************** PP VOZ 178 dalalyrlelklvdekksakgkvskdsladlqkklgrlta 217 dalalyrle+k++d+kksak+k+s+++l+++q+++grlta Sobic.009G198100.1.p 452 DALALYRLEYKSSDSKKSAKSKLSSSPLNEIQQQMGRLTA 491 **************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MAGDPAAGGG GDAHPASGSK SSRSSTRHRQ FRDRAKVRVD DLQEMFCGLQ SARKESRSAD 60 AAVLEEQVHQ MLREWRAELS VPSPASSLQN SQGNNREASD PPSDTLRLLQ LVVPEEEDDA 120 TSKLLVPQSA QQAPPPHQSH DHGQDSRMAN TDQQCEAMDG GTAPAQHSLG QGVEAGCGEV 180 AAVANAMFND QMYYIDQELS IDDFLCDDDY KINISGSNED QFNNLHGIGQ LEHQQFDLPL 240 DLPPTHSYAD ANNSEQNAGD VFVHMSDLLT TIWPSPSQYL GPKCALWDCG RPVGGTEDSG 300 DYCNPYHAGL ALNDDGLLGT RPVMRPKGID LKDGPLFAAL IAKVQGKNVG IPVCGGAATS 360 KSPWNAPELF DLSLLEGESL REWLFFDTPR RAFESGNRKQ RSLPDYSGRG WHESRKQVMK 420 DFAGLKRSYY MDPQPSSSHE WHLFEYEINA SDALALYRLE YKSSDSKKSA KSKLSSSPLN 480 EIQQQMGRLT ADSPVENKRT ARSKPKANQN DINANIHAHV NSPSQVNAPN AYQTTPQVNQ 540 MTFLNGNVVY GPHLPHSENV VHGPHLPQSE NVVYGPHLPH SENVVYGPHL PHGYKAEGSS 600 FFWNPSDGT* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G198100.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039629 | 0.0 | BT039629.1 Zea mays full-length cDNA clone ZM_BFc0035D15 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440076.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-145 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | C5Z0Y9 | 0.0 | C5Z0Y9_SORBI; Uncharacterized protein | ||||
STRING | Sb09g025580.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 | Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-102 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G198100.1.p |
Entrez Gene | 8067514 |
Publications ? help Back to Top | |||
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