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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G182800.2.p | ||||||||
Common Name | Sb09g024290, SORBIDRAFT_09g024290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 218aa MW: 23547.2 Da PI: 5.0081 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.8 | 6.1e-10 | 76 | 125 | 2 | 51 |
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 +++ + r+ NReA r++R++Kka + Lee+vk+L a N++L +l+ Sobic.009G182800.2.p 76 EDSAKPRKPLGNREAVRKYREKKKAHAAFLEEEVKKLRAANQQLLRRLQG 125 56667788899**********************************99974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 5.7E-15 | 73 | 143 | No hit | No description |
SMART | SM00338 | 4.8E-10 | 75 | 142 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.657 | 77 | 143 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 8.6E-13 | 77 | 132 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.56E-7 | 81 | 125 | No hit | No description |
CDD | cd14686 | 1.32E-11 | 82 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MDDGADLPCQ LLFSHPEMPD SFDEFFSSAT TTTCTHTHSC NPPGPSAAMH THTCLHTHTQ 60 VLGSGGEDDD DAREEEDSAK PRKPLGNREA VRKYREKKKA HAAFLEEEVK KLRAANQQLL 120 RRLQGHAALE AEVARLRSLL LDVRGKIDAE VGVFPFQRPC SVGSVACADP ALCFNGNSEV 180 GGCWEESSRP AVADVSEGLR NSMDVVASFV SSDPLAE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G182800.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT043256 | 0.0 | BT043256.1 Zea mays full-length cDNA clone ZM_BFc0133G19 mRNA, complete cds. | |||
GenBank | BT060532 | 0.0 | BT060532.1 Zea mays full-length cDNA clone ZM_BFb0012N22 mRNA, complete cds. | |||
GenBank | BT087956 | 0.0 | BT087956.1 Zea mays full-length cDNA clone ZM_BFb0329N19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303574.1 | 1e-160 | basic leucine zipper 23 | ||||
Refseq | XP_021303575.1 | 1e-160 | basic leucine zipper 23 | ||||
Swissprot | Q8GTS2 | 4e-53 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | C5Z0A9 | 1e-159 | C5Z0A9_SORBI; Uncharacterized protein | ||||
STRING | Sb09g024290.1 | 1e-159 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3831 | 36 | 75 | Representative plant | OGRP1970 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 1e-36 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G182800.2.p |
Entrez Gene | 8077047 |
Publications ? help Back to Top | |||
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