 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.009G181900.3.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
NF-YC |
| Protein Properties |
Length: 241aa MW: 26948.5 Da PI: 8.4808 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.009G181900.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 56.9 | 4.8e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P rikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ s ++++++ +++dfl+++v +
Sobic.009G181900.3.p 6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYDITIRKGVKTVGSSHLKQCIQTYNVYDFLTEVVSK 86
5789*************************************************************************9976 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 241 aa
Download sequence Send
to blast |
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YDITIRKGVK 60
TVGSSHLKQC IQTYNVYDFL TEVVSKVPDI GPSDVIADDK LGKRRKAEED GSEEELKRTR 120
NETESYTSNG RGRGRGRGRG RRGRGAWREV VTTHEQFAEN QSSKLASLKV EVADEVSNAT 180
EAKEATTPCH PKPSCQLQQL APPQPLQDLD HLLQDLDHLF HGQRKEQNSR IFLALGDCLT 240
*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 130 | 139 | RGRGRGRGRG |
| 2 | 130 | 140 | RGRGRGRGRGR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | EU967616 | 0.0 | EU967616.1 Zea mays clone 304857 dr1-associated corepressor mRNA, complete cds. |
