PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G180700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 333aa    MW: 36982.7 Da    PI: 6.7984
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G180700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.6e-104787545
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45
                          k+ rr+++NReAAr+sR+RKka++e+Le+   +L++  ++L
  Sobic.009G180700.1.p 47 KALRRLAQNREAARKSRLRKKAYVEQLENSRLKLSQLEQEL 87
                          788*************************9877777766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.2E-743106IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.0364589IPR004827Basic-leucine zipper domain
PfamPF001702.6E-74787IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-74790No hitNo description
Gene3DG3DSA:1.20.5.1702.5E-74792No hitNo description
PROSITE patternPS0003605065IPR004827Basic-leucine zipper domain
PfamPF141447.7E-31129205IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MAYASPGTDT STDLDTDEKN QMLELGQLVS LTASDSGNKS KDKLGQKALR RLAQNREAAR  60
KSRLRKKAYV EQLENSRLKL SQLEQELQRA RQQGIFIPTP GDQPNSTTEN GALAFDMDYA  120
RWQDDHNKQI NELRAALNAH ASDDDLRHMI DSIMAYYSEA FRLKRVAAKA DAFHVLSGMW  180
KTPVERCFMW FGGLRPSEIL KLLASHLEPL TEQQLASIYS LQQSSEQAEE DLSQGVRALQ  240
QSVAETLASG SLCPAGSSGN AADCSGQMAV AVGKLGTLES FLQEADDLRR RILEQMQHIL  300
TTRQSARALL AISDYLSRLR ALSSLWIARP RE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G180700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302989.10.0transcription factor TGAL1
RefseqXP_021302990.10.0transcription factor TGAL1
SwissprotQ415581e-176HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A1B6P9310.0A0A1B6P931_SORBI; Uncharacterized protein
STRINGSb09g024110.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48638185
Representative plantOGRP7221667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-137TGACG motif-binding factor 6