PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G178800.1.p
Common NameSb09g023920, SORBIDRAFT_09g023920
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 325aa    MW: 35038.1 Da    PI: 6.3178
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G178800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_150.35e-16254297548
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                           +r++r++kNRe+A rsR+RK+a++ eLe+kv  Le+eN++Lkk+
  Sobic.009G178800.1.p 254 RRQKRMIKNRESAARSRARKQAYTNELENKVSRLEEENERLKKQ 297
                           79***************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-15248300No hitNo description
SMARTSM003383.2E-11250306IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.702252297IPR004827Basic-leucine zipper domain
PfamPF001701.3E-13254298IPR004827Basic-leucine zipper domain
CDDcd147073.08E-26254301No hitNo description
SuperFamilySSF579592.38E-11254299No hitNo description
PROSITE patternPS000360257272IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MSSQTGGGRG SDAGSVQRGQ MQSLARQGSL YNLTLDEVQS HLGEPLLSMN FDELLKSVFP  60
DGVDPDGAVS GKPDPTSSLQ RQGSIMMPLQ LSKKTVDEVW KGIQGGPETS AAVDGRQRRE  120
RQPTLGEMTL EDFLVKAGVV TEGHMKDSAD LQSNVDTVGS SVVVAGASSL NPGAQWLQQY  180
QQQALGSQQP SLAGSYMASQ LHPQPLSIAT GAIMDSIYSD GQITSPSFGA LSDPQTPGRK  240
RGALGEVVDK VVERRQKRMI KNRESAARSR ARKQAYTNEL ENKVSRLEEE NERLKKQQEL  300
DEILSSAPPP EPKYQLRRTG SAAF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115120RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00409DAPTransfer from AT3G56850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G178800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0613450.0BT061345.1 Zea mays full-length cDNA clone ZM_BFb0137L05 mRNA, complete cds.
GenBankEU9663890.0EU966389.1 Zea mays clone 294076 bZIP transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439989.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X2
SwissprotQ9LES31e-85AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBLC5YZX90.0C5YZX9_SORBI; Uncharacterized protein
STRINGSb09g023920.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27073883
Representative plantOGRP5401580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56850.14e-84ABA-responsive element binding protein 3
Publications ? help Back to Top
  1. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]
  2. Song C,Kim T,Chung WS,Lim CO
    The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions.
    Mol. Cells, 2017. 40(8): p. 577-586
    [PMID:28756655]