PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G177100.1.p
Common NameSb09g023750, SORBIDRAFT_09g023750
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GRAS
Protein Properties Length: 494aa    MW: 51856.7 Da    PI: 6.4294
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G177100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.11.1e-841104812373
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           + lL+e A avs g+l+ a+++L +l ++asp++ +  +Rl+ayft+ALaarl++s+ ++++ l+p  ++      + aa+++f++vsP
  Sobic.009G177100.1.p 110 IALLMESAVAVSVGNLADANSMLLELAQMASPYAsSCGERLVAYFTKALAARLMSSWVGICAPLAPPCAA------VHAAFRAFYNVSP 192
                           689*******************************66779**********************888776665......678899******* PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                           + +f++l++NqaIlea++g++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp lR+Tg+g     s+ +l+ tg++La +A++l++pf
  Sobic.009G177100.1.p 193 FARFAYLACNQAILEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVLRVTGFGM----SRSALHDTGNQLAGLASKLNMPF 277
                           ******************************988447**************************....9********************** PP

                  GRAS 177 efnvlvakrledl....eleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse......... 251
                           ef ++ akr  d+     + ++  ++ gEalaV++    h l+d  ++       +++lv+ l+Pkv+++veqe    ++         
  Sobic.009G177100.1.p 278 EFYAI-AKRPGDVvvgaAVADMPSRRpGEALAVHWLR--HALYDAAGDDGA----TMQLVQWLEPKVLTLVEQERAGAAPgdvgggggd 359
                           ****6.665555524444444444335********98..888855555555....*******************544333445666777 PP

                  GRAS 252 ..sFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                              Fl+rf++al++ysalfdsl a+ p+e    r+ vE+ +lgrei nv+a  g +r  r + ++ W+e l + GF  +      +  a
  Sobic.009G177100.1.p 360 hgHFLDRFVSALHHYSALFDSLGASRPSELdASRHLVEQGVLGREIGNVLAVGGPSRSGRGK-FGCWQEELARHGFLRAGG----VGRA 443
                           78********************88877776599***********************999977.*************77665....5556 PP

                  GRAS 338 klllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
                           +l+   ++ + gy+v ++++  v lgWk+ pL++vS W
  Sobic.009G177100.1.p 444 QLVAGACPaGLGYTVADDHHGTVrLGWKGTPLYAVSTW 481
                           677777877888****88776666************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.62483464IPR005202Transcription factor GRAS
PfamPF035143.8E-82110481IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MQDSLSLMQF HDPYLYSGSA GSANLPLSHP FSPHHHQGFV DNCTGKDVAE FVDPATTTAA  60
EVSSDEQELA VSKEVSEGGG GGAVVVEVEE RNDATTARGG ELEAHGVRMI ALLMESAVAV  120
SVGNLADANS MLLELAQMAS PYASSCGERL VAYFTKALAA RLMSSWVGIC APLAPPCAAV  180
HAAFRAFYNV SPFARFAYLA CNQAILEAFH GKRLVHIVDL DVVPGGALQW LSLLPALAAR  240
PGGPPVLRVT GFGMSRSALH DTGNQLAGLA SKLNMPFEFY AIAKRPGDVV VGAAVADMPS  300
RRPGEALAVH WLRHALYDAA GDDGATMQLV QWLEPKVLTL VEQERAGAAP GDVGGGGGDH  360
GHFLDRFVSA LHHYSALFDS LGASRPSELD ASRHLVEQGV LGREIGNVLA VGGPSRSGRG  420
KFGCWQEELA RHGFLRAGGV GRAQLVAGAC PAGLGYTVAD DHHGTVRLGW KGTPLYAVST  480
WAWCPSPHGQ AHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-9711548225379Protein SCARECROW
5b3h_A6e-9711548224378Protein SCARECROW
5b3h_D6e-9711548224378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G177100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269620.0KJ726962.1 Zea mays clone pUT3662 GRAS transcription factor (GRAS56) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439979.20.0protein SCARECROW
TrEMBLC5YZV90.0C5YZV9_SORBI; Uncharacterized protein
STRINGSb09g023750.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Representative plantOGRP1426844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.18e-83GRAS family protein