PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G172000.2.p
Common NameSb08g016320, SORBIDRAFT_08g016320
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family FAR1
Protein Properties Length: 722aa    MW: 83101.2 Da    PI: 9.9112
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G172000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.81.5e-1748127190
                  FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                           +fYn Y+ evGF +r+s+ +++  n  +tk++++Cs+eg +++ k +         + rtgCka++++ + kd+ w++++  +eHnH+l
  Sobic.009G172000.2.p  48 EFYNLYSWEVGFGIRTSRGRTN-SNSYTTKKDLCCSCEGMSRNPKAA---------SCRTGCKAMIRLLRLKDHSWYISRSITEHNHSL 126
                           6****************99988.6666*************9998766.........9*******************************9 PP

                  FAR1  90 a 90 
                           +
  Sobic.009G172000.2.p 127 S 127
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-1448127IPR004330FAR1 DNA binding domain
PfamPF105512.0E-28249341IPR018289MULE transposase domain
PROSITE profilePS509669.829530564IPR007527Zinc finger, SWIM-type
PfamPF044346.9E-5535563IPR007527Zinc finger, SWIM-type
SMARTSM005756.1E-4539566IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MSGPDAKIAP TEESALSRAI KSSIDRKSEA IFFPYEGTRF NSFEEAKEFY NLYSWEVGFG  60
IRTSRGRTNS NSYTTKKDLC CSCEGMSRNP KAASCRTGCK AMIRLLRLKD HSWYISRSIT  120
EHNHSLSATC GEKKQWLSHS EIDPLTKDFI RKLRENNVTT GRVCNILGTS RGVGGFPVRR  180
EVIRSVCARL AQHNIEDDIS KTLTLLDKMK VDDPMMVVRY KVDEGGRIVH MLWCTGKNQQ  240
NYDRFGDAMT FDTTYRTNLY NMPFGLFVGV NNHFQSVVFG GVLLTSEKTE DFEWAFANFK  300
DIMKGKEPMT ILTDQCQGMA AAIKTTLQTS RHRWCKWHVL RKAKQWLGNV YTKNTGFKSE  360
FNKLVTEEVS IIKFERRWRQ LVRKYGVEKN KYLKRIYKHR GMWARPYFMH VFCAGMTSTQ  420
RSESANHMLK GFIQRSAPMH IFVSKFNEFQ NDRIAQEEKE IHVTKQMKRK RRIGVPIERH  480
AEEIYTRAMY DRLYNELYHA GSYLIKGRGA DEAYILVHYK EDGATDEKLF LVKDSGNFIS  540
CSCGLYNHVG MLCRHALKVL MHLDRTELPS GNILARWRRD VACETGHVSG QGVETSSLES  600
ATYIQKKLMV RRVLAMAGVE GTLDESGYKE AMDALDKIIS VRTTRVEEKK IELGERSEKP  660
TSCPKRAVKK GRRQNTSLKS YKASLKEQNK RKKYEEDEIS STSDNEQVTG TRKTKALWEI  720
E*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G172000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321752.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1Z5R4170.0A0A1Z5R417_SORBI; Uncharacterized protein
STRINGSb08g016320.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-77FAR1-related sequence 5