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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.009G171600.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
WRKY |
Protein Properties |
Length: 650aa MW: 68545.6 Da PI: 8.2102 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.009G171600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 102.6 | 2.2e-32 | 296 | 353 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60
dDgynWrKYGqK++kgse+prsYY+C+++gCp+kkkvers d++v+ei+Y+g Hnh+k
Sobic.009G171600.1.p 296 DDGYNWRKYGQKNMKGSENPRSYYKCSFPGCPTKKKVERSP-DGQVTEIVYKGAHNHPK 353
8****************************************.***************85 PP
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2 | WRKY | 102.8 | 1.9e-32 | 471 | 529 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+ +d+++v++tYeg+Hnh+
Sobic.009G171600.1.p 471 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERACHDTRAVVTTYEGKHNHD 529
59********************************************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 650 aa
Download sequence Send
to blast |
MVKLSNVYIG RRRVGLDSRH HFTILYAVAR PAASRSIRLR LASLRQPPTT LLSSPAMTST 60 PGSFGGTLAA NSGPVALSFP TTSFANFLGG GGSSASSSGA ADNGGVGLSK FKAMTPPSLP 120 LSSSHPPASP ASYLHAFSGI LDSPILLTPS LFPSPTTGAI PSEPFNWMGT SESLSGSVKT 180 EQQQYTDFTF QTAASAPPAT STSTMTGASH SASYLQSSVL MAPLGRVGDS YNGGELQQQQ 240 QQPPWAYQEP CTQFEAPAAA QPDNSMLGNG GYGGAPGPAV SGCFREQSQS NRPSSDDGYN 300 WRKYGQKNMK GSENPRSYYK CSFPGCPTKK KVERSPDGQV TEIVYKGAHN HPKPQSTRRS 360 ASSAPAPASH VLQSVGDAVP EHSFGALSGT PVATPENSSG SFGGDDEING VSSRLAGNFA 420 GADDLDDDEP DSKRWRKDGG DGDGGVSLSG NNRTVREPRV VVQTMSDIDV LDDGYRWRKY 480 GQKVVKGNPN PRSYYKCTTA GCPVRKHVER ACHDTRAVVT TYEGKHNHDV PPARGSSASL 540 YHRAALAAHQ MPQQAGGGSC YQQQQQHGGL VRTADGFGFG ASGGLHGGAP MMQAAESGFA 600 LSGFGHPAGT AAYSYTSHQQ QQTTTTNEAM YYAKDEPRDD MFFEQPLLF*
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}. |
Uniprot | TISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}. |