PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G171600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 650aa    MW: 68545.6 Da    PI: 8.2102
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G171600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32296353260
                           --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                           dDgynWrKYGqK++kgse+prsYY+C+++gCp+kkkvers  d++v+ei+Y+g Hnh+k
  Sobic.009G171600.1.p 296 DDGYNWRKYGQKNMKGSENPRSYYKCSFPGCPTKKKVERSP-DGQVTEIVYKGAHNHPK 353
                           8****************************************.***************85 PP

2WRKY102.81.9e-32471529159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vkg+++prsYY+Ct+agCpv+k+ver+ +d+++v++tYeg+Hnh+
  Sobic.009G171600.1.p 471 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTAGCPVRKHVERACHDTRAVVTTYEGKHNHD 529
                           59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-29287354IPR003657WRKY domain
PROSITE profilePS5081124.26290354IPR003657WRKY domain
SuperFamilySSF1182906.15E-25291354IPR003657WRKY domain
SMARTSM007745.8E-36295353IPR003657WRKY domain
PfamPF031063.2E-25296352IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-36456531IPR003657WRKY domain
SuperFamilySSF1182905.1E-29463531IPR003657WRKY domain
PROSITE profilePS5081138.159466531IPR003657WRKY domain
SMARTSM007743.2E-37471530IPR003657WRKY domain
PfamPF031061.0E-24472529IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MVKLSNVYIG RRRVGLDSRH HFTILYAVAR PAASRSIRLR LASLRQPPTT LLSSPAMTST  60
PGSFGGTLAA NSGPVALSFP TTSFANFLGG GGSSASSSGA ADNGGVGLSK FKAMTPPSLP  120
LSSSHPPASP ASYLHAFSGI LDSPILLTPS LFPSPTTGAI PSEPFNWMGT SESLSGSVKT  180
EQQQYTDFTF QTAASAPPAT STSTMTGASH SASYLQSSVL MAPLGRVGDS YNGGELQQQQ  240
QQPPWAYQEP CTQFEAPAAA QPDNSMLGNG GYGGAPGPAV SGCFREQSQS NRPSSDDGYN  300
WRKYGQKNMK GSENPRSYYK CSFPGCPTKK KVERSPDGQV TEIVYKGAHN HPKPQSTRRS  360
ASSAPAPASH VLQSVGDAVP EHSFGALSGT PVATPENSSG SFGGDDEING VSSRLAGNFA  420
GADDLDDDEP DSKRWRKDGG DGDGGVSLSG NNRTVREPRV VVQTMSDIDV LDDGYRWRKY  480
GQKVVKGNPN PRSYYKCTTA GCPVRKHVER ACHDTRAVVT TYEGKHNHDV PPARGSSASL  540
YHRAALAAHQ MPQQAGGGSC YQQQQQHGGL VRTADGFGFG ASGGLHGGAP MMQAAESGFA  600
LSGFGHPAGT AAYSYTSHQQ QQTTTTNEAM YYAKDEPRDD MFFEQPLLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-35287531877Probable WRKY transcription factor 4
2lex_A7e-35287531877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.199718e-74root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000250|UniProtKB:Q6IEQ7}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells. Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos. {ECO:0000250|UniProtKB:Q6IEQ7}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G171600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441255.10.0WRKY transcription factor WRKY24
SwissprotQ6B6R41e-141WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A1Z5R3170.0A0A1Z5R317_SORBI; Uncharacterized protein
STRINGSb09g023270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-87WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]