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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G160000.1.p | ||||||||
Common Name | Sb09g022280, SORBIDRAFT_09g022280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 26109.6 Da PI: 8.0682 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31 | 4.5e-10 | 75 | 122 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f+eL +l + + +K +K++iL A + +++L Sobic.009G160000.1.p 75 TKACREKLRRDRLNERFNELCAILEPG---KPPKADKVAILSDAARLLNQL 122 5678**********************9...99**************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-12 | 65 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.833 | 71 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-7 | 75 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.33E-6 | 75 | 127 | No hit | No description |
SMART | SM00353 | 1.2E-6 | 77 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-12 | 78 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MSCTGAGQAG GGWLLDYGLV EEEIQGSEFM YMVDDPAVSS VILGFDAPRK DDGGVQDNSG 60 AKKRSRPESS APPGTKACRE KLRRDRLNER FNELCAILEP GKPPKADKVA ILSDAARLLN 120 QLRTEAQKLK QSNESLQDSI KSLKAEKSEL RDEKTRLKAE RERLEQMLKG VSHAAVAAPA 180 PFVPHPAAAA AAPSFHPAAA FAQAGKFVPY PSYPPPAAFW QWIPPTSLDT TKDPAHWPPV 240 A* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.15134 | 0.0 | callus| leaf| ovary |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed throughout development, mostly in vasculatures. {ECO:0000269|PubMed:17028341}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G160000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT036372 | 0.0 | BT036372.1 Zea mays full-length cDNA clone ZM_BFb0110A15 mRNA, complete cds. | |||
GenBank | BT040271 | 0.0 | BT040271.1 Zea mays full-length cDNA clone ZM_BFc0075C03 mRNA, complete cds. | |||
GenBank | BT041388 | 0.0 | BT041388.1 Zea mays full-length cDNA clone ZM_BFc0115M23 mRNA, complete cds. | |||
GenBank | BT087616 | 0.0 | BT087616.1 Zea mays full-length cDNA clone ZM_BFb0133E06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439907.1 | 1e-177 | transcription factor ILR3 | ||||
Swissprot | Q9FH37 | 1e-58 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | C5YZ70 | 1e-175 | C5YZ70_SORBI; Uncharacterized protein | ||||
STRING | Sb09g022280.1 | 1e-176 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9386 | 31 | 36 | Representative plant | OGRP755 | 17 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-53 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G160000.1.p |
Entrez Gene | 8072534 |