PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G159900.1.p
Common NameSb09g022270, SORBIDRAFT_09g022270
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 571aa    MW: 61218.8 Da    PI: 8.2025
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G159900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.12e-103423791954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ ++++ LAk++gLt +qV++WF N R +
  Sobic.009G159900.1.p 342 FEHflHPYPTDSDKQMLAKQTGLTRNQVSNWFINARVR 379
                           554458******************************88 PP
2BELL102.14e-33209278372
                  BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           +e q +k++L+sl+e V++rYkqy++qlq vissFe+vagl +a+p++s+Al+++S+hF+cLk++i++q+
  Sobic.009G159900.1.p 209 AEQQWRKTRLISLMEDVCRRYKQYYQQLQSVISSFETVAGLSNAAPFASMALRTMSKHFKCLKEMIMSQL 278
                           58899**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-38137276IPR006563POX domain
PfamPF075264.4E-38142274IPR006563POX domain
PROSITE profilePS5007112.487320383IPR001356Homeobox domain
SMARTSM003892.9E-11323387IPR001356Homeobox domain
CDDcd000864.92E-14323384No hitNo description
SuperFamilySSF466893.81E-17325390IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-28326387IPR009057Homeodomain-like
PfamPF059205.0E-19340379IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSSAAGGGGY GAGGGAEHQH LLLGQAAGQL YHVPQHSRRE KLRFPPDPAD SPPPTAWPAP  60
PPFYSYASSS TSSYSPHSPT PLAHAQLVAH ALPAGAGAQI PSQNFALSLS SASSNPPPAP  120
RRQLAAGVAT GPYGPFTGYA AVLGRSRFLG PAQKLLEEIC DVGGRPPHLD RRSDEGMLDM  180
DAMDVVGDVD HDMDGGDRAT AEAVAVSGAE QQWRKTRLIS LMEDVCRRYK QYYQQLQSVI  240
SSFETVAGLS NAAPFASMAL RTMSKHFKCL KEMIMSQLRN TSKVVANDGI GKDDMANFAL  300
MGGGAGLLRG NNVNAFGQPH NIWRPQRGLP ERAVSVLRSW LFEHFLHPYP TDSDKQMLAK  360
QTGLTRNQVS NWFINARVRL WKPMVEEIHN LEMRQVQKNT SVDKNQLGMQ QIQHSTDSSG  420
KLSDPSNSQR GQSSGMTRNL SSPASRHIQD ELSQMPHDMP GQVSFAYNGL PTHHGLALSH  480
PQQAEAVSAG IGLGGVAAGG GGVSLTLGLH QNNRTYIAEP LPAALPLNLP HRFGLEDVSD  540
AYVMGSFGGG QDRHFTKGIG GHHLLHDFVG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5bng_A7e-17329387159Homeobox protein Meis2
5bng_B7e-17329387159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.209850.0ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G159900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0875270.0BT087527.1 Zea mays full-length cDNA clone ZM_BFb0102E07 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439906.10.0BEL1-like homeodomain protein 9
TrEMBLC5YZ690.0C5YZ69_SORBI; Uncharacterized protein
STRINGSb09g022270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25283881
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.15e-73TALE family protein