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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sobic.009G155200.1.p |
| Common Name | Sb09g021850, SORBIDRAFT_09g021850 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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| Family |
C2H2 |
| Protein Properties |
Length: 404aa MW: 44367.8 Da PI: 7.7003 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.009G155200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 16.9 | 1.7e-05 | 221 | 240 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
+ C+ C+k+F+r n++ H+
Sobic.009G155200.1.p 221 FICHVCSKTFNRYNNMQMHM 240
89*****************9 PP
|
| 2 | zf-C2H2 | 12.2 | 0.00057 | 307 | 329 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ C Cgk+F k + ++H +++
Sobic.009G155200.1.p 307 FGCRRCGKPFAVKGDWRTHEKNC 329
56*****************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 404 aa
Download sequence Send
to blast |
MVLRACAVME AGTFSVPFYE WLKPRSSSSS PPPSPSSSSS TTSSTTLSTP SIDQLAAVDE 60
RHAMTCLPLL GRLEGRAATP DHGHNNPIKE ELLSNNIATT GGATRREEAA AAGVDLNIGL 120
PAAAATTGGR GYSSEEVPMD EEDDDEEEDF EEEEDEKHEK CKVEEAGGEQ QHGEMVVEPV 180
EQRSDYLRVG GEEGIKGFVG SRGRRYWIPT PAQILVGPVQ FICHVCSKTF NRYNNMQMHM 240
WGHGREYRKG PESLKGTQAA TLALLKLPCY CCAAGCRNNV AHPRARPLKD FRTLQTHYKR 300
KHGDKHFGCR RCGKPFAVKG DWRTHEKNCG KRWFCACGSD FKHKRSLNDH VRSFGGGHFS 360
VTPDQAAAVV PRPSLLMKPS KERIIRFDQQ GAAAPWNGAH AHA*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK102658 | 0.0 | AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence. |
