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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G155050.8.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 443aa MW: 48737.8 Da PI: 6.8487 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 37 | 7.5e-12 | 119 | 148 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Sobic.009G155050.8.p 119 AKTERRLAQNREAARKSRLRKKAYVQQLET 148 799*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.4E-4 | 116 | 192 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.232 | 118 | 160 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 6.9E-9 | 119 | 149 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-7 | 120 | 161 | No hit | No description |
SuperFamily | SSF57959 | 3.21E-7 | 120 | 162 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 123 | 138 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 1.7E-28 | 200 | 275 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence Send to blast |
MYAAAGYLAA RPPTLEIFPS WPMSHLQQPY SGNSHSVGST TDSSSGQNSM PQTELVSPGS 60 MRADSGQRQE VLMVTVDDYN YEQGLGAAAT TAQIFQQHAA GQDKGKHGST RKDGKLLDAK 120 TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEQEL HGARSQGLFP GGGGAPGDLS 180 SGAVIFDMEY ARWLEDDTKH MTELQAVLQP QIIDANLGAI VEECMRHYDE LFHLRAMLAR 240 SDVFHLMTGL WATTAERCFL WMGGFRPSEI LKMLIPQLDP LTEPQLLGMY NLQRSSEQTE 300 EALGQGLQQL HQSLADAVGA SPLSDGANVA NYTALMALAL DRLDTLESFY RQADSLRQQT 360 LHQMRRILTT RQTARCFLSI SEYHRRLRAL SSVWASRPPT ESSVAAAAAA AGAENVSPAT 420 GTTSEQAALR PYNHQSQQFP GF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G155050.8.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968847 | 0.0 | EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021302620.1 | 0.0 | transcription factor TGAL5 isoform X3 | ||||
Swissprot | Q6F2N0 | 0.0 | TGAL5_ORYSJ; Transcription factor TGAL5 | ||||
TrEMBL | A0A1Z5R2U9 | 0.0 | A0A1Z5R2U9_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G000842_P03 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 1e-108 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G155050.8.p |
Publications ? help Back to Top | |||
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