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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.009G155050.8.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 443aa MW: 48737.8 Da PI: 6.8487 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.009G155050.8.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 37 | 7.5e-12 | 119 | 148 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33
k err+++NReAAr+sR+RKka++++Le+
Sobic.009G155050.8.p 119 AKTERRLAQNREAARKSRLRKKAYVQQLET 148
799*************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 443 aa
Download sequence Send
to blast |
MYAAAGYLAA RPPTLEIFPS WPMSHLQQPY SGNSHSVGST TDSSSGQNSM PQTELVSPGS 60 MRADSGQRQE VLMVTVDDYN YEQGLGAAAT TAQIFQQHAA GQDKGKHGST RKDGKLLDAK 120 TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEQEL HGARSQGLFP GGGGAPGDLS 180 SGAVIFDMEY ARWLEDDTKH MTELQAVLQP QIIDANLGAI VEECMRHYDE LFHLRAMLAR 240 SDVFHLMTGL WATTAERCFL WMGGFRPSEI LKMLIPQLDP LTEPQLLGMY NLQRSSEQTE 300 EALGQGLQQL HQSLADAVGA SPLSDGANVA NYTALMALAL DRLDTLESFY RQADSLRQQT 360 LHQMRRILTT RQTARCFLSI SEYHRRLRAL SSVWASRPPT ESSVAAAAAA AGAENVSPAT 420 GTTSEQAALR PYNHQSQQFP GF*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU968847 | 0.0 | EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Cheng CH, et al.
A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] - Chern M, et al.
Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]
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