PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G155050.6.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 449aa MW: 49336.3 Da PI: 6.4525

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G155050.6.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37	7.6e-12	125	154	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Sobic.009G155050.6.p 125 AKTERRLAQNREAARKSRLRKKAYVQQLET 154 799*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-4	122	198	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	124	166	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.1E-9	125	155	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.0E-7	126	167	No hit	No description
SuperFamily	SSF57959	3.3E-7	126	168	No hit	No description
PROSITE pattern	PS00036	0	129	144	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.7E-28	206	281	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MIGSDVDTES AGYLAARPPT LEIFPSWPMS HLQQPYSGNS HSVGSTTDSS SGQNSMPQTE 60 LVSPGSMRAD SGQRQEVLMV TVDDYNYEQG LGAAATTAQI FQQHAAGQDK GKHGSTRKDG 120 KLLDAKTERR LAQNREAARK SRLRKKAYVQ QLETSRIRLQ QIEQELHGAR SQGLFPGGGG 180 APGDLSSGAV IFDMEYARWL EDDTKHMTEL QAVLQPQIID ANLGAIVEEC MRHYDELFHL 240 RAMLARSDVF HLMTGLWATT AERCFLWMGG FRPSEILKML IPQLDPLTEP QLLGMYNLQR 300 SSEQTEEALG QGLQQLHQSL ADAVGASPLS DGANVANYTA LMALALDRLD TLESFYRQAD 360 SLRQQTLHQM RRILTTRQTA RCFLSISEYH RRLRALSSVW ASRPPTESSV AAAAAAAGAE 420 NVSPATGTTS EQAALRPYNH QSQQFPGF*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MIGSDVDTES AGYLAARPPT LEIFPSWPMS HLQQPYSGNS HSVGSTTDSS SGQNSMPQTE  60
LVSPGSMRAD SGQRQEVLMV TVDDYNYEQG LGAAATTAQI FQQHAAGQDK GKHGSTRKDG  120
KLLDAKTERR LAQNREAARK SRLRKKAYVQ QLETSRIRLQ QIEQELHGAR SQGLFPGGGG  180
APGDLSSGAV IFDMEYARWL EDDTKHMTEL QAVLQPQIID ANLGAIVEEC MRHYDELFHL  240
RAMLARSDVF HLMTGLWATT AERCFLWMGG FRPSEILKML IPQLDPLTEP QLLGMYNLQR  300
SSEQTEEALG QGLQQLHQSL ADAVGASPLS DGANVANYTA LMALALDRLD TLESFYRQAD  360
SLRQQTLHQM RRILTTRQTA RCFLSISEYH RRLRALSSVW ASRPPTESSV AAAAAAAGAE  420
NVSPATGTTS EQAALRPYNH QSQQFPGF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G155050.6.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968847	0.0	EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021302620.1	0.0	transcription factor TGAL5 isoform X3
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A1Z5R2V8	0.0	A0A1Z5R2V8_SORBI; Uncharacterized protein
STRING	GRMZM2G000842_P03	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-107	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.009G155050.6.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]