PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G155050.3.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 521aa MW: 56977.7 Da PI: 6.201

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G155050.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.7	9.2e-12	197	226	4	33
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33 k err+++NReAAr+sR+RKka++++Le+ Sobic.009G155050.3.p 197 AKTERRLAQNREAARKSRLRKKAYVQQLET 226 699*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.4E-4	194	270	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.232	196	238	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.6E-9	197	227	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.02E-7	198	240	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.3E-7	198	239	No hit	No description
PROSITE pattern	PS00036	0	201	216	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.1E-28	278	353	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 521 aa Download sequence Send to blast
MAQGEESSWC MTSSDHGRAA SFSQAIACGS QRRASAAQPA NFLELQPAAA PYYFGELEEA 60 LIHGTRTSVD HGMIGSDVDT ESAGYLAARP PTLEIFPSWP MSHLQQPYSG NSHSVGSTTD 120 SSSGQNSMPQ TELVSPGSMR ADSGQRQEVL MVTVDDYNYE QGLGAAATTA QIFQQHAAGQ 180 DKGKHGSTRK DGKLLDAKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR LQQIEQELHG 240 ARSQGLFPGG GGAPGDLSSG AVIFDMEYAR WLEDDTKHMT ELQAVLQPQI IDANLGAIVE 300 ECMRHYDELF HLRAMLARSD VFHLMTGLWA TTAERCFLWM GGFRPSEILK MLIPQLDPLT 360 EPQLLGMYNL QRSSEQTEEA LGQGLQQLHQ SLADAVGASP LSDGANVANY TALMALALDR 420 LDTLESFYRQ ADSLRQQTLH QMRRILTTRQ TARCFLSISE YHRRLRALSS VWASRPPTES 480 SVAAAAAAAG AENVSPATGT TSEQAALRPY NHQSQQFPGF *

Sequence ? help Back to Top

Protein Sequence Length: 521 aa Download sequence Send to blast

MAQGEESSWC MTSSDHGRAA SFSQAIACGS QRRASAAQPA NFLELQPAAA PYYFGELEEA  60
LIHGTRTSVD HGMIGSDVDT ESAGYLAARP PTLEIFPSWP MSHLQQPYSG NSHSVGSTTD  120
SSSGQNSMPQ TELVSPGSMR ADSGQRQEVL MVTVDDYNYE QGLGAAATTA QIFQQHAAGQ  180
DKGKHGSTRK DGKLLDAKTE RRLAQNREAA RKSRLRKKAY VQQLETSRIR LQQIEQELHG  240
ARSQGLFPGG GGAPGDLSSG AVIFDMEYAR WLEDDTKHMT ELQAVLQPQI IDANLGAIVE  300
ECMRHYDELF HLRAMLARSD VFHLMTGLWA TTAERCFLWM GGFRPSEILK MLIPQLDPLT  360
EPQLLGMYNL QRSSEQTEEA LGQGLQQLHQ SLADAVGASP LSDGANVANY TALMALALDR  420
LDTLESFYRQ ADSLRQQTLH QMRRILTTRQ TARCFLSISE YHRRLRALSS VWASRPPTES  480
SVAAAAAAAG AENVSPATGT TSEQAALRPY NHQSQQFPGF *

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G155050.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968847	0.0	EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021302620.1	0.0	transcription factor TGAL5 isoform X3
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A1Z5R2T5	0.0	A0A1Z5R2T5_SORBI; Uncharacterized protein
STRING	GRMZM2G000842_P03	0.0	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-108	bZIP family protein

Link Out ? help Back to Top
Phytozome	Sobic.009G155050.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]