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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.009G155050.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
bZIP |
Protein Properties |
Length: 523aa MW: 57223 Da PI: 6.3071 |
Description |
bZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.009G155050.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | bZIP_1 | 36.7 | 9.2e-12 | 199 | 228 | 4 | 33 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee 33
k err+++NReAAr+sR+RKka++++Le+
Sobic.009G155050.1.p 199 AKTERRLAQNREAARKSRLRKKAYVQQLET 228
699*************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 523 aa
Download sequence Send
to blast |
MAQGEESSWC MTSSDHGRAA SFSQAIACGS QRRASAAQPA NFLELQPAAA PYYFGELEEA 60 LIHGTRTSVD HGMIGSDVDT ECKTAGYLAA RPPTLEIFPS WPMSHLQQPY SGNSHSVGST 120 TDSSSGQNSM PQTELVSPGS MRADSGQRQE VLMVTVDDYN YEQGLGAAAT TAQIFQQHAA 180 GQDKGKHGST RKDGKLLDAK TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEQEL 240 HGARSQGLFP GGGGAPGDLS SGAVIFDMEY ARWLEDDTKH MTELQAVLQP QIIDANLGAI 300 VEECMRHYDE LFHLRAMLAR SDVFHLMTGL WATTAERCFL WMGGFRPSEI LKMLIPQLDP 360 LTEPQLLGMY NLQRSSEQTE EALGQGLQQL HQSLADAVGA SPLSDGANVA NYTALMALAL 420 DRLDTLESFY RQADSLRQQT LHQMRRILTT RQTARCFLSI SEYHRRLRAL SSVWASRPPT 480 ESSVAAAAAA AGAENVSPAT GTTSEQAALR PYNHQSQQFP GF*
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU968847 | 0.0 | EU968847.1 Zea mays clone 324521 transcription factor TGA6 mRNA, complete cds. |
Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Cheng CH, et al.
A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] - Chern M, et al.
Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]
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