PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.009G152100.2.p | ||||||||
Common Name | Sb09g021580, SORBIDRAFT_09g021580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 261aa MW: 26897.1 Da PI: 7.4247 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 40.7 | 5.1e-13 | 188 | 233 | 5 | 50 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r++r++kNRe+A rsR RK+a+++eLe v +Le+e +L e e Sobic.009G152100.2.p 188 QRQKRMIKNRESAARSRDRKQAYVAELESQVMQLEEEQAELLREQE 233 89************************************99987654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.8E-8 | 184 | 252 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.53 | 186 | 238 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-11 | 187 | 233 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14707 | 4.18E-17 | 188 | 233 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 3.4E-13 | 189 | 244 | No hit | No description |
SuperFamily | SSF57959 | 1.2E-10 | 189 | 237 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 191 | 206 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MASSRVMASS SPPQHGAGSS SSDLARFRSS SGIGSMNMDD IIRNIYGPDA VNAAAGAGPA 60 EPSPAAAAAA PEAAAAAVAR RTSEEVWKEI SAAGGLSAPV LLPPPPAACS GTGGSRGGAA 120 EMTLEDFLAR DSCARAAVLE GNMALGFPDA DGGDAAGSGV AGGVGVGGGR GSTRKRALLD 180 PADRAVMQRQ KRMIKNRESA ARSRDRKQAY VAELESQVMQ LEEEQAELLR EQEDRRQNRL 240 KEMISVRNKF SASLFNFHAI * |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Sbi.13060 | 0.0 | leaf |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the ABA-responsive elements (ABREs) in vitro. Involved in abiotic stress responses and abscisic acid (ABA) signaling (PubMed:20039193). Involved in the signaling pathway that induces growth inhibition in response to D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00648 | PBM | Transfer from LOC_Os05g36160 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.009G152100.2.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by anoxia, drought, salt stress, oxidative stress, cold and abscisic acid (ABA) (PubMed:20039193). Induced by D-allose (PubMed:23397192). {ECO:0000269|PubMed:20039193, ECO:0000269|PubMed:23397192}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304113.1 | 0.0 | bZIP transcription factor 23 isoform X2 | ||||
Swissprot | Q0JHF1 | 9e-45 | BZP12_ORYSJ; bZIP transcription factor 12 | ||||
TrEMBL | A0A1Z5R3Y7 | 0.0 | A0A1Z5R3Y7_SORBI; Uncharacterized protein | ||||
STRING | Sb09g021580.1 | 1e-117 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44080.1 | 2e-12 | bZIP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.009G152100.2.p |
Entrez Gene | 8058517 |
Publications ? help Back to Top | |||
---|---|---|---|
|