PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G151600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 280aa    MW: 28555 Da    PI: 7.8934
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G151600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-1967116255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                           +++GVr+++ +g+W+AeIrdp     +  +r++lg+f tae Aa+a+++a+++++g
  Sobic.009G151600.1.p  67 RFRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFETAEAAARAYDEAALRFRG 116
                           69*******.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.9E-3667130IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-2267125IPR016177DNA-binding domain
PfamPF008471.7E-1367116IPR001471AP2/ERF domain
PROSITE profilePS5103225.26467124IPR001471AP2/ERF domain
CDDcd000184.16E-1967126No hitNo description
Gene3DG3DSA:3.30.730.101.9E-3267125IPR001471AP2/ERF domain
PRINTSPR003672.5E-116879IPR001471AP2/ERF domain
PRINTSPR003672.5E-1190106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MHMHGVRGSQ RKGQQRDADD AADALYIPSH GSPYGGGEQG GAAAMEDGHH YSPTAAAAGG  60
GGGGERRFRG VRQRPWGKWA AEIRDPHKAA RVWLGTFETA EAAARAYDEA ALRFRGSRAK  120
LNFPEDARLT TPSTTAVATA AAPAAAGSST TTTMAAAAST GGYYYPATAS AAAVSAADYL  180
QYQMLLQGAG SSSHGGYPLY YDYGGGGGAM SSSSGSYSFP ASTVTVASVP SSASSAPSYG  240
EAAGQWTAWP PESAWSYPAT TGSSWSGSSQ YPPSTRPPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2368124663ATERF1
3gcc_A3e-2368124663ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G151600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302939.11e-165ethylene-responsive transcription factor ABR1
TrEMBLA0A1B6P8M80.0A0A1B6P8M8_SORBI; Uncharacterized protein
STRINGGRMZM2G100727_P012e-80(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.12e-25ethylene response factor 110