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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.009G142500.1.p |
Common Name | Sb09g020770, SORBIDRAFT_09g020770 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
MIKC_MADS |
Protein Properties |
Length: 213aa MW: 24765.2 Da PI: 9.7297 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.009G142500.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 79.9 | 1.8e-25 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvt skRr+g+ KKA E+ vLCdaev v+ifss gkl++y+s
Sobic.009G142500.1.p 9 KRIENSTNRQVTVSKRRAGLVKKAREIGVLCDAEVGVVIFSSGGKLHDYCS 59
79***********************************************96 PP
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2 | K-box | 64.5 | 3.8e-22 | 71 | 167 | 1 | 97 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89
yq++sgk l+++k++ l+ e++++kke++n+q ++Rhl+GedL+sL+ +eL +e+ L+++ ++ R+k+++++++ ++ ++ e+e++
Sobic.009G142500.1.p 71 YQTNSGKILWDEKHKILSAEIDRIKKENDNMQIQLRHLKGEDLNSLQPRELIAIEEGLQNGQTNMREKQMDHWRMRKRNGKMLEDENRM 159
89999999**********************************************************************99999999988 PP
K-box 90 enkaLrkk 97
+++++
Sobic.009G142500.1.p 160 LSFRMHQQ 167
87777766 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MGRGKIEIKR IENSTNRQVT VSKRRAGLVK KAREIGVLCD AEVGVVIFSS GGKLHDYCSP 60 RTSLSRILEK YQTNSGKILW DEKHKILSAE IDRIKKENDN MQIQLRHLKG EDLNSLQPRE 120 LIAIEEGLQN GQTNMREKQM DHWRMRKRNG KMLEDENRML SFRMHQQAVD LSGGMRELEI 180 GYHQVQHDRE FTSQMPFTFR VQPNHPNLQE DE*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 7e-18 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 7e-18 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 7e-18 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 7e-18 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6byy_A | 9e-18 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 9e-18 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 9e-18 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 9e-18 | 1 | 75 | 1 | 73 | MEF2 CHIMERA |
6c9l_A | 7e-18 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 7e-18 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 7e-18 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 7e-18 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 7e-18 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 7e-18 | 1 | 75 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in lodicules, at intermediate levels in stamens, and weakly in carpels. Expressed in pollen. {ECO:0000269|PubMed:10394955, ECO:0000269|PubMed:12905025, ECO:0000269|Ref.1}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS16. {ECO:0000269|PubMed:9869408}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ726930 | 0.0 | KJ726930.1 Zea mays clone pUT3475 MADS transcription factor (MADS29) mRNA, partial cds. |
Publications
? help Back to Top |
- Ronai Z, et al.
Transcription factor binding study by capillary zone electrophoretic mobility shift assay. Electrophoresis, 2003. 24(1-2): p. 96-100 [PMID:12652578] - Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] - Kang HG,An G
Morphological alterations by ectopic expression of the rice OsMADS4 gene in tobacco plants. Plant Cell Rep., 2005. 24(2): p. 120-6 [PMID:15703945] - Cheng CH, et al.
A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] - Chen C, et al.
Adapting rice anther culture to gene transformation and RNA interference. Sci. China, C, Life Sci., 2006. 49(5): p. 414-28 [PMID:17172048] - Yoshida H, et al.
superwoman1-cleistogamy, a hopeful allele for gene containment in GM rice. Plant Biotechnol. J., 2007. 5(6): p. 835-46 [PMID:17764519] - Yao SG,Ohmori S,Kimizu M,Yoshida H
Unequal genetic redundancy of rice PISTILLATA orthologs, OsMADS2 and OsMADS4, in lodicule and stamen development. Plant Cell Physiol., 2008. 49(5): p. 853-7 [PMID:18378529] - Seok HY, et al.
Rice ternary MADS protein complexes containing class B MADS heterodimer. Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604 [PMID:20888318] - Wang H, et al.
OsMADS32 interacts with PI-like proteins and regulates rice flower development. J Integr Plant Biol, 2015. 57(5): p. 504-13 [PMID:25081486]
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