 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.009G140500.1.p |
| Common Name | Sb09g020590, SORBIDRAFT_09g020590 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
NAC |
| Protein Properties |
Length: 420aa MW: 44744.3 Da PI: 7.1273 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.009G140500.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 157.8 | 4.3e-49 | 46 | 171 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
+pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+++ + kew+f+++rd+ky++g+r+nr+t+sgyWkatg d+
Sobic.009G140500.1.p 46 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELIAFLDLYRFDPWELPAMAVMGGKEWFFYVPRDRKYRNGDRPNRVTASGYWKATGADR 133
79***************************.89***************7767789*********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ ++++ +glkktLvfy+g+apkg++++W+m+eyrl
Sobic.009G140500.1.p 134 MIRGENNRPIGLKKTLVFYSGKAPKGVRSSWIMNEYRL 171
************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 420 aa
Download sequence Send
to blast |
MSRDLEDGHG AVGSVIAAAG GEAAEVAVGG DGGGEAGDAH DNDVVMPGFR FHPTEEELIE 60
FYLRRKVEGK RFNVELIAFL DLYRFDPWEL PAMAVMGGKE WFFYVPRDRK YRNGDRPNRV 120
TASGYWKATG ADRMIRGENN RPIGLKKTLV FYSGKAPKGV RSSWIMNEYR LPPPATDADP 180
LIPKSEISLC RVYKRSGIDD GHGQSSSSTQ QASSARRTSS RTGVPTTTVR QRSSPSSTPL 240
SPTQQISSFH LLQGESSSAS PPAPIMDHQV VTVHSAPPQL LPHHPMPCTY APVTTMSTVE 300
AAPQSAQAGA ATALASTYSV FNMAAGAAAM AGSSRSVDEL STLVGPTPAQ AYASLSAATG 360
GHLLPLLTTP PLPMLQMTPH GALPIVAPPS SSSVADKLSW DWNPIPDTTD RDYNPSGFK*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-54 | 47 | 196 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-54 | 47 | 196 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-54 | 47 | 196 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-54 | 47 | 196 | 19 | 166 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-54 | 47 | 196 | 19 | 166 | NAC domain-containing protein 19 |
| 4dul_B | 1e-54 | 47 | 196 | 19 | 166 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT060478 | 0.0 | BT060478.1 Zea mays full-length cDNA clone ZM_BFb0004F04 mRNA, complete cds. |
