PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

Sobic.009G135300.8.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 855aa MW: 95211.7 Da PI: 7.2061

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G135300.8.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	41.1	5.8e-13	761	847	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek......dgkwevtklele 84 ++++YA +GF ++ +++k++ r+ Cs++g+ + k + +++ r++ +++tgCk +k+k + +gk ++k++l+ Sobic.009G135300.8.p 761 MFRRYAVATGFPIKWARKKRT-------VRDISCSMSGTWKYYKPE-QQRTRNKFTKKTGCKVYMKLKHVSdmegnyNGKVIIDKIQLD 841 89**********9987776.......6889******9988.99999**********9986555455678889*** PP FAR1 85 HnHela 90 HnH+l+ Sobic.009G135300.8.p 842 HNHPLS 847 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-7	761	847	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 855 aa Download sequence Send to blast
MKQKLDHVPE RVTTITISNS QQFYEIQIPL STGDNGGMAS SANTNADGTH DASGSIHERV 60 VPRHHQKKTI PNKFQQKGAQ CSSAATPKRR TPDTSQHEDL LSGPTRRSPR LAASQDNDDD 120 DFEPAIKRLR LKVPAHKDPK SKKSSLPSIQ EEDDDGILGK INSCCTPNHV LDAINKLSEP 180 QKNRVHELGW GKFLEIAIDC VESRNLFLYL LDRVDIDSMF LRVPPNIELP INKAAVHAVL 240 GVPAGTEVIS KKSSKELSNA KRELMAQLGI ATNKITVPRL LEEVAKGNAD DLSMKCFFLV 300 IFNRFLFPGS AFDIANTDLQ FIMDFQNFGK VDWQQAVIDH IRTSAKEWQS PGAKNTANPT 360 IRSCAPFLLI YYLENLDHPL NDNNHRMVVP RAAVFSKQYI STLTNADRWA DKYDRICYGK 420 LRQKNPVGSA YQKVYTMQHT AVPASFQLPQ LSDLLKGVLD NVAASTNPHF LQLITTVDRD 480 IRANQKVIHE LHHTNECLLI KFSEDVKELL ANASIPTVTE VQHQTGQQTR PESSTRNLQE 540 PTLQRNDSNL AGPSHTETAT VQVEQPADAT QPLAGHVSSC SAGARQEEIV AFRDEQVAEQ 600 EQPLTDLVDD HSVSNQRATA NGLNILTMVC EQLGKQPHGS AHLDMGGHHE DSLIRKEHRW 660 AAAMASHSVR GPSSSMQLPV TGSQTGVSQP LPMPIPIQVT PEDLDHKDAI DTPATPPATL 720 SAAEIVTPEV GKTYTHPPAL PEDMIPKVGL LFDTEEHAYE MFRRYAVATG FPIKWARKKR 780 TVRDISCSMS GTWKYYKPEQ QRTRNKFTKK TGCKVYMKLK HVSDMEGNYN GKVIIDKIQL 840 DHNHPLSDEL IRFE*

Sequence ? help Back to Top

Protein Sequence Length: 855 aa Download sequence Send to blast

MKQKLDHVPE RVTTITISNS QQFYEIQIPL STGDNGGMAS SANTNADGTH DASGSIHERV  60
VPRHHQKKTI PNKFQQKGAQ CSSAATPKRR TPDTSQHEDL LSGPTRRSPR LAASQDNDDD  120
DFEPAIKRLR LKVPAHKDPK SKKSSLPSIQ EEDDDGILGK INSCCTPNHV LDAINKLSEP  180
QKNRVHELGW GKFLEIAIDC VESRNLFLYL LDRVDIDSMF LRVPPNIELP INKAAVHAVL  240
GVPAGTEVIS KKSSKELSNA KRELMAQLGI ATNKITVPRL LEEVAKGNAD DLSMKCFFLV  300
IFNRFLFPGS AFDIANTDLQ FIMDFQNFGK VDWQQAVIDH IRTSAKEWQS PGAKNTANPT  360
IRSCAPFLLI YYLENLDHPL NDNNHRMVVP RAAVFSKQYI STLTNADRWA DKYDRICYGK  420
LRQKNPVGSA YQKVYTMQHT AVPASFQLPQ LSDLLKGVLD NVAASTNPHF LQLITTVDRD  480
IRANQKVIHE LHHTNECLLI KFSEDVKELL ANASIPTVTE VQHQTGQQTR PESSTRNLQE  540
PTLQRNDSNL AGPSHTETAT VQVEQPADAT QPLAGHVSSC SAGARQEEIV AFRDEQVAEQ  600
EQPLTDLVDD HSVSNQRATA NGLNILTMVC EQLGKQPHGS AHLDMGGHHE DSLIRKEHRW  660
AAAMASHSVR GPSSSMQLPV TGSQTGVSQP LPMPIPIQVT PEDLDHKDAI DTPATPPATL  720
SAAEIVTPEV GKTYTHPPAL PEDMIPKVGL LFDTEEHAYE MFRRYAVATG FPIKWARKKR  780
TVRDISCSMS GTWKYYKPEQ QRTRNKFTKK TGCKVYMKLK HVSDMEGNYN GKVIIDKIQL  840
DHNHPLSDEL IRFE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G135300.8.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF184876	0.0	KF184876.1 Saccharum hybrid cultivar R570 clone BAC 027M20 complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021304150.1	0.0	uncharacterized protein LOC8085124 isoform X2
TrEMBL	A0A1Z5R2K8	0.0	A0A1Z5R2K8_SORBI; Uncharacterized protein
STRING	Sb09g020125.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18960.1	4e-08	FAR1-related sequence 12

Link Out ? help Back to Top
Phytozome	Sobic.009G135300.8.p