PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G124200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family AP2
Protein Properties Length: 417aa    MW: 45550.4 Da    PI: 8.9964
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G124200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.3e-1778137155
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Sobic.009G124200.1.p  78 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 137
                           57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1278137IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-1778147IPR016177DNA-binding domain
CDDcd000188.34E-1178147No hitNo description
Gene3DG3DSA:3.30.730.101.0E-1579146IPR001471AP2/ERF domain
PROSITE profilePS5103219.83679145IPR001471AP2/ERF domain
SMARTSM003806.2E-2579151IPR001471AP2/ERF domain
PRINTSPR003674.3E-58091IPR001471AP2/ERF domain
PRINTSPR003674.3E-5127147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MASPNPEAAA GLQTVAVAAG GGEGGSSSSL GAVAGAAAVS SSGELVPRRS LAVRKERVCT  60
AKERISRMPP CAAGKRSSIY RGVTRHRWTG RYEAHLWDKS TWNQNQNKKG KQVYLGAYDD  120
EEAAARAYDL AALKYWGAGT QINFPVSDYA RDLEEMQMIS KEDYLVSLRR KSSAFYRGLP  180
KYRGLLRQLH NSRWDTSLGL GNDYMSLSCG KDIMLDGKFA GSFGLERKID LTNYIRWWLP  240
KKTRQSDTSK TEEIADEIRA IESSMQQTEP YKLPSLGLGS PSKPSSVGLS ACSILSQSDA  300
FKSFLEKSTK LSEECTLSKE IVEGKTVASV PATGYDTGAI NINMNELLVQ RSTYSMAPVM  360
PTPMKTTWSP ADPSVDPLFW SNFVLPSSQP VTMATITTTT FTKNEVSSSD PFQSQE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G124200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0402580.0BT040258.1 Zea mays full-length cDNA clone ZM_BFc0073M24 mRNA, complete cds.
GenBankBT0540580.0BT054058.1 Zea mays full-length cDNA clone ZM_BFc0159N21 mRNA, complete cds.
GenBankBT0557190.0BT055719.1 Zea mays full-length cDNA clone ZM_BFb0137I19 mRNA, complete cds.
GenBankEU9668900.0EU966890.1 Zea mays clone 297967 AP2 domain transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021302446.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-103AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLC5YXG30.0C5YXG3_SORBI; Uncharacterized protein
STRINGGRMZM2G013657_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92003136
Representative plantOGRP91071013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.12e-94AP2 family protein