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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sobic.009G124200.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
AP2 |
| Protein Properties |
Length: 417aa MW: 45550.4 Da PI: 8.9964 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.009G124200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53 | 8.3e-17 | 78 | 137 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++n+ k+ k+++lg ++ +e Aa+a++ a++k++g
Sobic.009G124200.1.p 78 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 137
57*******************766644468557*************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 417 aa
Download sequence Send
to blast |
MASPNPEAAA GLQTVAVAAG GGEGGSSSSL GAVAGAAAVS SSGELVPRRS LAVRKERVCT 60
AKERISRMPP CAAGKRSSIY RGVTRHRWTG RYEAHLWDKS TWNQNQNKKG KQVYLGAYDD 120
EEAAARAYDL AALKYWGAGT QINFPVSDYA RDLEEMQMIS KEDYLVSLRR KSSAFYRGLP 180
KYRGLLRQLH NSRWDTSLGL GNDYMSLSCG KDIMLDGKFA GSFGLERKID LTNYIRWWLP 240
KKTRQSDTSK TEEIADEIRA IESSMQQTEP YKLPSLGLGS PSKPSSVGLS ACSILSQSDA 300
FKSFLEKSTK LSEECTLSKE IVEGKTVASV PATGYDTGAI NINMNELLVQ RSTYSMAPVM 360
PTPMKTTWSP ADPSVDPLFW SNFVLPSSQP VTMATITTTT FTKNEVSSSD PFQSQE*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT040258 | 0.0 | BT040258.1 Zea mays full-length cDNA clone ZM_BFc0073M24 mRNA, complete cds. |
| GenBank | BT054058 | 0.0 | BT054058.1 Zea mays full-length cDNA clone ZM_BFc0159N21 mRNA, complete cds. |
| GenBank | BT055719 | 0.0 | BT055719.1 Zea mays full-length cDNA clone ZM_BFb0137I19 mRNA, complete cds. |
| GenBank | EU966890 | 0.0 | EU966890.1 Zea mays clone 297967 AP2 domain transcription factor mRNA, complete cds. |
