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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.009G103800.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
ERF |
Protein Properties |
Length: 258aa MW: 27799.9 Da PI: 7.8285 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.009G103800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.9 | 6e-19 | 42 | 91 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr+++ +g+WvAeIr+p++ r r +lg+f tae+Aa+a+++a++ l+g
Sobic.009G103800.1.p 42 RYRGVRQRS-WGKWVAEIREPRK---RSRKWLGTFATAEDAARAYDRAALLLYG 91
59****999.**********954...5**********************98877 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006970 | Biological Process | response to osmotic stress |
GO:0009414 | Biological Process | response to water deprivation |
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway |
GO:0009744 | Biological Process | response to sucrose |
GO:0009749 | Biological Process | response to glucose |
GO:0010119 | Biological Process | regulation of stomatal movement |
GO:0010353 | Biological Process | response to trehalose |
GO:0010449 | Biological Process | root meristem growth |
GO:0010896 | Biological Process | regulation of triglyceride catabolic process |
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway |
GO:0032880 | Biological Process | regulation of protein localization |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048316 | Biological Process | seed development |
GO:0048527 | Biological Process | lateral root development |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MEPNNNQPAA TAEEAAAGSG PGGEGGRKGK APKGGPENGK FRYRGVRQRS WGKWVAEIRE 60 PRKRSRKWLG TFATAEDAAR AYDRAALLLY GPRAHLNLTS PPPPTLAAPR SHPHSSATSS 120 SSAPPALRPL LPRPPLHHQL SSGACAPAPD FHHHHQQFQC HHLLPQAQPT PPLYYANTAT 180 ASTVTTTVPT RVAVPQEPAV APAVGSSTSL QEPQASTPEE APRETGWDYH GGEEEDYAAA 240 LLWDEPEPFF WFDVFLK*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY125490 | 0.0 | AY125490.1 Zea mays AP2 domain transcription factor (abi4) gene, complete cds. |