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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G101400.2.p | ||||||||
Common Name | DREB2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | ERF | ||||||||
Protein Properties | Length: 266aa MW: 28343.3 Da PI: 4.1521 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.2 | 2.8e-20 | 12 | 62 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +gy+GVr++ +g+WvAeIr+p + r r +lg+f tae+Aa+a+++a+++++g Sobic.009G101400.2.p 12 CGYRGVRQRT-WGKWVAEIREP---N-RvNRLWLGTFPTAEDAARAYDEAARAMYG 62 79*****999.**********8...2.489**********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.44E-31 | 12 | 70 | No hit | No description |
Pfam | PF00847 | 1.2E-13 | 12 | 62 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 13 | 71 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.616 | 13 | 70 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-33 | 13 | 76 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-11 | 14 | 25 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-32 | 14 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.1E-11 | 36 | 52 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MRGKGGPDNT QCGYRGVRQR TWGKWVAEIR EPNRVNRLWL GTFPTAEDAA RAYDEAARAM 60 YGDLARTNFP RPHAATYAQA ALVSTSSQAA PMAVGALWPG TSCESTTTSN HSDIASTSHK 120 PEASDSSSSL KAEWPEALEA GSSCIQAGTP SVADKVFGTL EPITKLPDGG VTNLPDGGVI 180 NLPDGGDDCF DIGEMLSMME ADPHNEGGAD VGMGQPWCLD GLDSSVLESM LQSEPEPFLM 240 SEEQEMFLAG FESPSSFFED LERLK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-16 | 14 | 70 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.11649 | 0.0 | callus| leaf| panicle| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G101400.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF915838 | 0.0 | JF915838.1 Sorghum bicolor dehydration responsive element binding protein 2 (DREB2) gene, complete cds, alternatively spliced; and dehydration responsive element binding protein 2 isoform b (DREB2) gene, complete cds. | |||
GenBank | JF915839 | 0.0 | JF915839.1 Sorghum bicolor dehydration responsive element binding protein 2 isoform a (DREB2) mRNA, complete cds, alternatively spliced. | |||
GenBank | JF915840 | 0.0 | JF915840.1 Sorghum bicolor dehydration responsive element binding protein 2 isoform b (DREB2) mRNA, complete cds, alternatively spliced. | |||
GenBank | JF915841 | 0.0 | JF915841.1 Sorghum bicolor dehydration responsive element binding protein 2 isoform c (DREB2) mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021302431.1 | 0.0 | dehydration-responsive element-binding protein 2B-like isoform X1 | ||||
Refseq | XP_021302432.1 | 0.0 | dehydration-responsive element-binding protein 2B-like isoform X2 | ||||
Refseq | XP_021302433.1 | 0.0 | dehydration-responsive element-binding protein 2B-like isoform X3 | ||||
Swissprot | Q5W6R4 | 3e-54 | DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B | ||||
TrEMBL | A0A1B6P850 | 0.0 | A0A1B6P850_SORBI; Uncharacterized protein | ||||
TrEMBL | J7FBE8 | 0.0 | J7FBE8_SORBI; Dehydration responsive element binding protein 2 isoform b | ||||
STRING | Sb09g016150.2 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 1e-25 | DRE-binding protein 2A |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G101400.2.p |
Publications ? help Back to Top | |||
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