PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G057600.1.p
Common NameSb09g004870, SORBIDRAFT_09g004870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 535aa    MW: 60548.8 Da    PI: 8.4445
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G057600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-1531114897
                           -HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                    B3   8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           +d  +++ +++p +f  ++  +    s t++l+ ++g ++++ +  ++  g++vl++GW  F++a++L+++D +vFk+ g+s+f  +v+
  Sobic.009G057600.1.p  31 ADEDSRSFMRIPQEFG-SYlRK--IISDTIKLNAPNGCTYDIAV--CREMGEIVLRSGWDVFADAHNLEQNDYLVFKFCGSSSF--KVH 112
                           57788899*******9.66343..4788****************..********************************999999..666 PP

                           EE CS
                    B3  96 vf 97 
                           ++
  Sobic.009G057600.1.p 113 IY 114
                           65 PP
2B336.96.5e-122082871192
                           HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           l+ + +++p   +e+   ++  + t++le ++ + ++v    r++ +++vl++GW  Fv a++++e+D ++F+++++s+ e 
  Sobic.009G057600.1.p 208 LNGCSIRIPSILMEDVT-EEVFKATVKLEASDANLYSVSA-TRQCNDEIVLQSGWDTFVVAHHVQERDLIIFRHKRNSRLEV 287
                           4458899**99998884.345788****************.3555556*************************998777654 PP
3B340.93.7e-134395321098
                           HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                    B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                            ++++r+++++++ +++  + + + tl+le  +g++W   l +    ++++g   +++GW +Fv++n+L  gD+++F++++  ++ +++
  Sobic.009G057600.1.p 439 RNNRSRMIFSNEYSRRCLPSATHDLTLQLEGCWGKQWHTLLHVqggdSRSRGVRRISRGWAQFVRDNRLVLGDICLFEMEKAtRCLRMK 527
                           5677899999****99955667888***************9877775444444899**********************99888999999 PP

                           EEEE- CS
                    B3  94 vkvfr 98 
                           v+++ 
  Sobic.009G057600.1.p 528 VHLIP 532
                           98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-1621115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.11124117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.59E-1627115IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-827117IPR003340B3 DNA binding domain
CDDcd100173.05E-1332115No hitNo description
PfamPF023623.3E-1332115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-15185300IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.02E-14192298IPR015300DNA-binding pseudobarrel domain
CDDcd100179.59E-11195291No hitNo description
SMARTSM010190.03197293IPR003340B3 DNA binding domain
PROSITE profilePS508639.488198293IPR003340B3 DNA binding domain
PfamPF023629.8E-10207287IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-14419529IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-14422529IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-16425529No hitNo description
SMARTSM010190.12427534IPR003340B3 DNA binding domain
PROSITE profilePS5086310.856430534IPR003340B3 DNA binding domain
PfamPF023621.8E-11438532IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 535 aa     Download sequence    Send to blast
MGSTGGNCKR WWDHQDRDCK NNEKMRFHVV ADEDSRSFMR IPQEFGSYLR KIISDTIKLN  60
APNGCTYDIA VCREMGEIVL RSGWDVFADA HNLEQNDYLV FKFCGSSSFK VHIYSSCGGS  120
QKITSCVNPD PEILEDVPPC TTSDHHVPNG NEIPHPGHVQ TPACFEYFTS GGSRLTKAQD  180
KKVLEMARTI KSEIPVYVAV MNKSNVDLNG CSIRIPSILM EDVTEEVFKA TVKLEASDAN  240
LYSVSATRQC NDEIVLQSGW DTFVVAHHVQ ERDLIIFRHK RNSRLEVFIL NPSGHQKNTS  300
WFGMQDVSNT QQMCDDSVEI VEPPHKKVGI IDVSSSSDDE KNVAAYSAKS ARRQKQQLGH  360
FAKTRRMAST SCPSIKSEHD RFLLNSNNCE GPTRPPYIIS NKVTLSRVQE KMVLEKVQAI  420
RSRFPIYVAV INRSSAAERN NRSRMIFSNE YSRRCLPSAT HDLTLQLEGC WGKQWHTLLH  480
VQGGDSRSRG VRRISRGWAQ FVRDNRLVLG DICLFEMEKA TRCLRMKVHL IPKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G057600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439346.10.0B3 domain-containing protein LOC_Os12g40080
TrEMBLC5Z1030.0C5Z103_SORBI; Uncharacterized protein
STRINGSb09g004870.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16378713
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-12B3 family protein