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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G052800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bHLH | ||||||||
Protein Properties | Length: 129aa MW: 13711.7 Da PI: 10.6772 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.2 | 0.00072 | 62 | 110 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHH..HHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKae..iLekAveYIksLq 55 rrR ++++++e Lr+l+P++s+++++ + ++ L +A YI +Lq Sobic.009G052800.1.p 62 SRRRDMEVRKKMEVLRRLVPSSSGGGDGDGDEVDelLLLRAAGYIAQLQ 110 5899999**************9855555444444224455666776666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.02E-6 | 59 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-4 | 61 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
MGAHTGSRGC SPSTSTARRR TRPPVASSAA MAAARRPSPT TKPTMSKDVD AAEGKARVKA 60 CSRRRDMEVR KKMEVLRRLV PSSSGGGDGD GDEVDELLLL RAAGYIAQLQ AQVTVMQFMV 120 DVLEDAKH* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G052800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683641.1 | 9e-33 | transcription factor bHLH83-like | ||||
TrEMBL | A0A1B6P6N4 | 3e-86 | A0A1B6P6N4_SORBI; Uncharacterized protein | ||||
STRING | Sb09g004490.1 | 3e-64 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9111 | 21 | 26 | Representative plant | OGRP14305 | 2 | 2 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G052800.1.p |