PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G039200.1.p
Common NameSb09g003310, SORBIDRAFT_09g003310
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 377aa    MW: 42851.4 Da    PI: 7.196
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G039200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.72.7e-13138182347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +W+ +E++ ++++ + +G g+Wk I+r++  +Rt++q+ s+ qky
  Sobic.009G039200.1.p 138 AWSHDEHKNFLRGLEAYGRGNWKNISRYFVPTRTPNQICSHAQKY 182
                           6*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.18129187IPR017930Myb domain
SuperFamilySSF466891.12E-13134186IPR009057Homeodomain-like
SMARTSM007171.4E-8135185IPR001005SANT/Myb domain
TIGRFAMsTIGR015578.7E-13137185IPR006447Myb domain, plants
PfamPF002495.5E-11138182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-10138182IPR009057Homeodomain-like
CDDcd001671.34E-9138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MDPNFSGVWS AFKIDMVRSF IASHNTNNTY TNDPNKKHND IVDELQARFP GKERYQVIQL  60
YVDLVVEMNT TQSNQQVVAS KAPVNDNFGM STEDTNMNNM EMIHGYILDD VQTMKMVEEL  120
PHRLNIVHKK KRQHPPIAWS HDEHKNFLRG LEAYGRGNWK NISRYFVPTR TPNQICSHAQ  180
KYFHRNECTT RKQRFSINDV SLYDTEPWVQ KNSSSLKCLT FGHSAYNTHY YDIEGQHAVL  240
NKLAHPSQAS STHAATWTRG QHVLAGSSID PTMVQSNALG WEALAFTRGA NNTNYYDFDG  300
QHNAMNNLAY VDPTSNNHVA TWTRGQHTTT NSSIVPAMVQ NTSPSEEVLS FTGNSYNTNY  360
YDYSGQNVAL NSGQPW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G039200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440567.10.0uncharacterized protein LOC8068215
TrEMBLC5YZP10.0C5YZP1_SORBI; Uncharacterized protein
STRINGSb09g003310.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-19MYB family protein