PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G039100.1.p
Common NameSb09g003300, SORBIDRAFT_09g003300
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 289aa    MW: 33184.9 Da    PI: 6.518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G039100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.6e-10140185247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             WT  E+  ++ + + +G g+Wk I++ + +++t+ q+ s+ qk+
  Sobic.009G039100.1.p 140 RFWTLAEHRNFLLGLRAYGRGNWKNISKDFVTTKTPVQVSSHAQKF 185
                           56******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-8133189IPR009057Homeodomain-like
PROSITE profilePS5129414.241134190IPR017930Myb domain
SuperFamilySSF466898.58E-14136191IPR009057Homeodomain-like
SMARTSM007176.1E-8138188IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.5E-13138189IPR006447Myb domain, plants
CDDcd001671.52E-6142186No hitNo description
PfamPF002498.6E-7142184IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MDPKFNGDWS ANEIEMVRSI IASHDANSSC TNNRNAKHYG IVDELHARFP RKNKRQVIDL  60
YVDLVVEMLN AMEMSSNQLP MMSNDLVVDN FGVMVENPGM HSMDLFPSYL IDEMKAKRTV  120
EEQHHRQVVV PQEDKQRARR FWTLAEHRNF LLGLRAYGRG NWKNISKDFV TTKTPVQVSS  180
HAQKFFRRQE STTKKQRYSI NDVSLYDAKL WVQDNSSSWE AFTSNAYNPY SYGFGGQLTM  240
DNLTQVYSAS QASNNQTLTW TGDQQTSSPS AAPTTEEDGT QMEWTNYY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.121760.0ovary
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G039100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1848681e-158KF184868.1 Saccharum hybrid cultivar R570 clone BAC 022B01 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440566.10.0transcription factor SRM1
TrEMBLC5YZP00.0C5YZP0_SORBI; Uncharacterized protein
STRINGSb09g003300.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-23MYB family protein