PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.009G036400.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bHLH

Protein Properties

Length: 689aa MW: 72100.8 Da PI: 7.7043

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.009G036400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.2	1.1e-16	473	519	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L+el+P++ K +Ka++Le+A+eY+k Lq Sobic.009G036400.1.p 473 VHNMSERRRRDRINEKMRALQELIPNC-----NKIDKASMLEEAIEYLKTLQ 519 5***********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.61E-18	466	523	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.5E-21	466	527	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.15E-20	467	529	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.019	469	518	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.9E-14	473	519	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-17	475	524	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MTSFIRCSDL VKVNYPQTPA NKQLFTSWKQ AFCVVLLRIY IPKIPPGQAH ASPLPSPSRP 60 HLPSPPLLGN PSLARPEPER RRLLVVLGRG SCCYGGRCRV AFLNCSCSCS CPHLFSFLPS 120 ISLLLPLLSS LLRPSACVLH PPPPVAAPTA PAPLMTGPGD ELAELLWDHG PALRRPPPPF 180 QPFTCSAAGS SRSHELKRHP VPVPVPLGMH THGAGLGLGG LPVHDDEDDA VPWLHCPVVV 240 DDGDADTAPL PPEYCASLLS EYSEAAAPAA TASHAAAVVP AAPPPPEAAV ANKLAPPSAT 300 GSGVGEGVLN FTFFSRPLQR PQAASAAASH PVESTVVQAA TNRLRSTPLF SEQRMAWLQP 360 PKAPRATAAA AATPPPPPPP PPAPPQLAPM LPDTRHGETV AQPRSQPDAR PPDAAAVTAS 420 SVCSGNGDRS QLKRSCHLAA DCSVSPDEDM DDEPGATRRS AARSAKRSRT AEVHNMSERR 480 RRDRINEKMR ALQELIPNCN KIDKASMLEE AIEYLKTLQL QVQMMSMGTG LCMPPAAMLL 540 PAMHQHMQAL HHHHHHPMAH FPHLGMGLGY GMGMGMGATA AAGFDMLPRV AAGAHFPCPP 600 MAMPPPPGAA MFGVPGTGMA TLPAAFAHMA GAAPAGQMEA GAGDAAPAAA AAAAAAAPAR 660 PEEAEHPPVR GVAQGDQEAQ QQQHPKQT*

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MTSFIRCSDL VKVNYPQTPA NKQLFTSWKQ AFCVVLLRIY IPKIPPGQAH ASPLPSPSRP  60
HLPSPPLLGN PSLARPEPER RRLLVVLGRG SCCYGGRCRV AFLNCSCSCS CPHLFSFLPS  120
ISLLLPLLSS LLRPSACVLH PPPPVAAPTA PAPLMTGPGD ELAELLWDHG PALRRPPPPF  180
QPFTCSAAGS SRSHELKRHP VPVPVPLGMH THGAGLGLGG LPVHDDEDDA VPWLHCPVVV  240
DDGDADTAPL PPEYCASLLS EYSEAAAPAA TASHAAAVVP AAPPPPEAAV ANKLAPPSAT  300
GSGVGEGVLN FTFFSRPLQR PQAASAAASH PVESTVVQAA TNRLRSTPLF SEQRMAWLQP  360
PKAPRATAAA AATPPPPPPP PPAPPQLAPM LPDTRHGETV AQPRSQPDAR PPDAAAVTAS  420
SVCSGNGDRS QLKRSCHLAA DCSVSPDEDM DDEPGATRRS AARSAKRSRT AEVHNMSERR  480
RRDRINEKMR ALQELIPNCN KIDKASMLEE AIEYLKTLQL QVQMMSMGTG LCMPPAAMLL  540
PAMHQHMQAL HHHHHHPMAH FPHLGMGLGY GMGMGMGATA AAGFDMLPRV AAGAHFPCPP  600
MAMPPPPGAA MFGVPGTGMA TLPAAFAHMA GAAPAGQMEA GAGDAAPAAA AAAAAAAPAR  660
PEEAEHPPVR GVAQGDQEAQ QQQHPKQT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	477	482	ERRRRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may act as negative regulator of phyB-dependent light signal transduction. {ECO:0000269\|PubMed:17485859}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.009G036400.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by light in dark-grown etiolated seedlings. {ECO:0000269\|PubMed:17485859}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021302585.1	0.0	transcription factor APG isoform X2
Swissprot	Q0JNI9	2e-82	PIL15_ORYSJ; Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15
TrEMBL	A0A1B6P6I0	0.0	A0A1B6P6I0_SORBI; Uncharacterized protein
STRING	Sb09g003090.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3527	37	75
Representative plant	OGRP258	16	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-31	phytochrome interacting factor 3

Link Out ? help Back to Top
Phytozome	Sobic.009G036400.1.p

Publications ? help Back to Top
Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa. Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91 [PMID:17485859] Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15. N Biotechnol, 2011. 28(6): p. 788-97 [PMID:21549224]