 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sobic.009G032000.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
| Family |
MYB |
| Protein Properties |
Length: 478aa MW: 51970.1 Da PI: 7.7527 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sobic.009G032000.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.9 | 4.6e-18 | 195 | 242 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT++Ed llv++++ +G g+W++ ar g++Rt+k+c++rw++yl
Sobic.009G032000.1.p 195 RGPWTADEDILLVNYIAVHGEGRWNSLARSAGLKRTGKSCRLRWLNYL 242
89********************************************97 PP
|
| 2 | Myb_DNA-binding | 52.9 | 8.7e-17 | 248 | 291 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T+eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++
Sobic.009G032000.1.p 248 RGNITAEEQLLILDLHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 291
7999******************.*********.***********96 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0009751 | Biological Process | response to salicylic acid |
| GO:0016036 | Biological Process | cellular response to phosphate starvation |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0046686 | Biological Process | response to cadmium ion |
| GO:0005634 | Cellular Component | nucleus |
| GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding |
| GO:0005516 | Molecular Function | calmodulin binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 478 aa
Download sequence Send
to blast |
MDTGARRRRR RRRQRSELAT CFISLLRSNC LVRRVGDTRT RTRAHSDPSI VVLTSSSAGS 60
SSYINPSSSS RSPTIPSLSV CVDPPPQLPL HHRPPSFSSS STIYYLKKLA RAHTPQLIEL 120
THHHHLIRDS DPPLASMDDM DMAMAMVSFD DLDQVLAMSP SSSATSSAPV AAAQPAAAGS 180
SSDDEAAAIC ADLRRGPWTA DEDILLVNYI AVHGEGRWNS LARSAGLKRT GKSCRLRWLN 240
YLRPDVRRGN ITAEEQLLIL DLHSRWGNRW SKIAQHLPGR TDNEIKNYWR TRVQKHARHL 300
RCDVNSASFR HVVRHVWMPR LRERVQAAAG RDAGEGCGGG VQSPAAAPLV PVVVEAPAAT 360
TTASAPSACY DYYDASSALR RPSSSTLTAD DTSHDYAGVY AYTSAAAATP TNDNQGCRQM 420
TTDDDVFAGT ALSELLATSG RDDDSSSASM IGLPEFGFGD LEDGLWSLDD LCLQQLC*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 5 | 12 | RRRRRRRR |
| 2 | 6 | 12 | RRRRRRR |
| 3 | 7 | 14 | RRRRRRQR |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727711 | 1e-178 | KJ727711.1 Zea mays clone pUT5650 MYB transcription factor (MYB101) gene, partial cds. |
