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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G030100.1.p | ||||||||
Common Name | Sb09g002510, SORBIDRAFT_09g002510 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | bZIP | ||||||||
Protein Properties | Length: 148aa MW: 16039 Da PI: 10.1688 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 46 | 1.1e-14 | 30 | 89 | 4 | 63 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +r+ +NRe+ArrsR++K++++eeL +v+ L+aeN a ++++ + e ak++ ++ Sobic.009G030100.1.p 30 ERKRKRMLSNRESARRSRAKKQQRLEELVAEVARLQAENAAAQSRIAAFEREFAKVDGDN 89 46789999*****************************************99999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.3E-18 | 27 | 91 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.496 | 29 | 92 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.6E-12 | 29 | 85 | No hit | No description |
Pfam | PF00170 | 4.1E-10 | 31 | 83 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.2E-10 | 31 | 84 | No hit | No description |
CDD | cd14702 | 1.16E-16 | 32 | 83 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 34 | 49 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MSSSRRSSSP DSNNNTDVSG GGGGGFAADE RKRKRMLSNR ESARRSRAKK QQRLEELVAE 60 VARLQAENAA AQSRIAAFER EFAKVDGDNA VLRARHGELS SRLESLGGVL EVLQMAGAAV 120 DIPEMVTEDP MLRPWQPSFP PMQPIGF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.14633 | 0.0 | callus| embryo| leaf| panicle| root| shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G030100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009178 | 1e-130 | BT009178.1 Triticum aestivum clone wl1n.pk0114.f9:fis, full insert mRNA sequence. | |||
GenBank | BT068578 | 1e-130 | BT068578.2 Zea mays full-length cDNA clone ZM_BFb0345C11 mRNA, complete cds. | |||
GenBank | EU977026 | 1e-130 | EU977026.1 Zea mays clone 996656 ocs element-binding factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439223.1 | 1e-102 | ocs element-binding factor 1 | ||||
Swissprot | P24068 | 7e-32 | OCS1_MAIZE; Ocs element-binding factor 1 | ||||
TrEMBL | C5YZG1 | 1e-100 | C5YZG1_SORBI; Uncharacterized protein | ||||
STRING | Sb09g002510.1 | 1e-101 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1886 | 35 | 100 | Representative plant | OGRP551 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 9e-30 | basic region/leucine zipper motif 53 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G030100.1.p |
Entrez Gene | 8071272 |
Publications ? help Back to Top | |||
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