PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G028300.3.p | ||||||||
Common Name | Sb09g002370, SORBIDRAFT_09g002370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | Trihelix | ||||||||
Protein Properties | Length: 359aa MW: 39168.2 Da PI: 6.3373 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.7 | 2.4e-21 | 65 | 133 | 1 | 69 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 +W++ e+ a +++r ++++++ ++k++k+lWe+vs++++++gf r+p qCk+kw+nl +r+k +++ + Sobic.009G028300.3.p 65 QWSHAETAAFLAVRADLDHSFLTTKRNKALWEAVSARLHAQGFARTPDQCKSKWKNLVTRFKGTEAAAA 133 7*************************************************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd12203 | 2.81E-21 | 64 | 129 | No hit | No description |
Pfam | PF13837 | 5.7E-16 | 65 | 130 | No hit | No description |
PROSITE profile | PS50090 | 7.491 | 66 | 122 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MDPFHHLNTS FSNPYHPLLS PSPPHHPHFP PLPPLPDPPH HQLPSASAAS SAAAATSLER 60 DRLPQWSHAE TAAFLAVRAD LDHSFLTTKR NKALWEAVSA RLHAQGFART PDQCKSKWKN 120 LVTRFKGTEA AAAAAAAAAA AAVVDPASAS AAQSRPQFPF HDEVRRIFDA RAERAQALER 180 KRAKGKGVRD RDDEGAGEGE DVDEEDEDDE IEADAAEAAV GGDEELPVDA SRSGGGGGGG 240 TKKRRRKQQQ QAARAARVAA DQGEVEAMLR EFMRRQAEME ERWVEAAEAR EAERRAREEE 300 WRAAMVALGE ERLALVRRWR EREDAWRARA EEREERRHQL VAALLAKLGG GGGGGGDS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 246 | KKRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G028300.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU946342 | 1e-113 | EU946342.1 Zea mays clone 305005 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002439215.1 | 0.0 | trihelix transcription factor GT-3b | ||||
Refseq | XP_021302586.1 | 0.0 | trihelix transcription factor GT-3b | ||||
Refseq | XP_021302587.1 | 0.0 | trihelix transcription factor GT-3b | ||||
TrEMBL | A0A1Z5R0L5 | 0.0 | A0A1Z5R0L5_SORBI; Uncharacterized protein | ||||
STRING | Sb09g002370.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 5e-28 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G028300.3.p |
Entrez Gene | 8068166 |