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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.009G016600.1.p |
Common Name | Sb09g001590, SORBIDRAFT_09g001590 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
MYB |
Protein Properties |
Length: 335aa MW: 36212.5 Da PI: 7.897 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.009G016600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 47.4 | 4.5e-15 | 54 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +lv v+++G ++W+ a+ g++Rt+k+c++rw +yl
Sobic.009G016600.1.p 54 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 101
79********************************************97 PP
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2 | Myb_DNA-binding | 49.9 | 7.1e-16 | 107 | 150 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rgr T++E+ l++++++q+G++ W++Iar ++ gRt++++k++w++
Sobic.009G016600.1.p 107 RGRITADEERLILQLHEQWGSR-WSRIARSLP-GRTDNEIKNFWRT 150
899*******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 335 aa
Download sequence Send
to blast |
MDDHLHHQLM ATPAAAAASM CGSKSKKLQG GGGGEHRSSR GSGGGNSPPA AMRKGPWTEE 60 EDAQLVWFVR LFGERRWDFL AKVSGLRRTG KSCRLRWVNY LHPGLRRGRI TADEERLILQ 120 LHEQWGSRWS RIARSLPGRT DNEIKNFWRT RARKQKAAAQ QQQGSRSSKT ASAFSGSSSS 180 SSVTATTSRS SCSGSPSPSP SPSSGGCGGT ATTSSSAVTE SALRQSSGGD NDDEDAELDE 240 ASTTTAARQH QYHHQQQQQE CYASDHFFWN DIAAAEAASY MFIDGLAGAG PGGHPATAEV 300 GAEPPSSPTW EYCSDYSLWR IDDNEYYKKM LDSS*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ728360 | 1e-118 | KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds. |