PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G008000.1.p
Common NameSb09g000900, SORBIDRAFT_09g000900
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family E2F/DP
Protein Properties Length: 290aa    MW: 31656.4 Da    PI: 8.064
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G008000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.11.2e-2270157271
               E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse.....................dvknkrRRiYDilNVLealnliekkekneir 68 
                           ++++Lr+l+++   + e +e+ g++t+neva+eLv++                     d+kn+rRR+YD+lNVL a ++i+k +k+ei+
  Sobic.009G008000.1.p  70 NGRGLRQLSMR---VREIVESkGRTTCNEVADELVADfsnlninidspdpdnpcpqqhDEKNIRRRVYDALNVLIATEIISK-DKKEIQ 154
                           789********...66666666************************************************************.****** PP

               E2F_TDP  69 wkg 71 
                           w+g
  Sobic.009G008000.1.p 155 WRG 157
                           *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094045.1E-956289IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.104.0E-3765161IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.7E-3269157IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023194.7E-2171157IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-1672158IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011381.8E-54162288IPR014889Transcription factor DP, C-terminal
PfamPF087812.5E-35166271IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.88E-34167269No hitNo description
CDDcd144584.79E-35167256IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0007049Biological Processcell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MMFSAPTRGG GGGSPSDRGC TAPSTPGNER TVARCLNGLD IQGDDTPSSQ PAAASNKKKR  60
GAQAVGPDKN GRGLRQLSMR VREIVESKGR TTCNEVADEL VADFSNLNIN IDSPDPDNPC  120
PQQHDEKNIR RRVYDALNVL IATEIISKDK KEIQWRGLPR TNRGHGLKAR INKKNAYLQD  180
LQEQYACLQN LVRQNKQLHG SGDAPSGQLD LPFLLVQTRP HATVEVEMSE DMQLLHFDFN  240
STPFELHDDS DVLKAMGLSG KIRKADCTQA PVVNGGECST STPNRDKRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-2668159690PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.60381e-115pollen
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the whole cell cycle. {ECO:0000269|PubMed:11669580}.
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:16920782}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G008000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0365661e-134BT036566.1 Zea mays full-length cDNA clone ZM_BFb0123L22 mRNA, complete cds.
GenBankBT0410801e-134BT041080.1 Zea mays full-length cDNA clone ZM_BFc0172H21 mRNA, complete cds.
GenBankHQ8587671e-134HQ858767.1 Zea mays clone UT1683 E2F-DP transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303181.10.0transcription factor-like protein DPB
SwissprotQ9FNY23e-99DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1B6P5Y20.0A0A1B6P5Y2_SORBI; Uncharacterized protein
STRINGSb09g000900.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Representative plantOGRP25111734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-101Transcription factor DP