PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G188900.2.p
Common NameSb08g022960, SORBIDRAFT_08g022960
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TALE
Protein Properties Length: 659aa    MW: 73131.5 Da    PI: 5.7372
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G188900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.45.9e-094084451954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +e+  LA+++gLt +q+++WF N R +
  Sobic.008G188900.2.p 408 FEHflHPYPKDSEKLMLARQTGLTRSQISNWFINARVR 445
                           665559******************************88 PP
2BELL119.81.2e-38271342172
                  BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                           e+qelq+k akL+ +l+eVd++Yk+y++q+q v+ssF++vag g+akpYt++Al++iSrhFrcLkdai +qi
  Sobic.008G188900.2.p 271 EKQELQNKMAKLMAMLDEVDRKYKHYYHQMQSVVSSFDMVAGPGAAKPYTAVALQTISRHFRCLKDAINDQI 342
                           689*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.8E-56195340IPR006563POX domain
PfamPF075261.2E-51201338IPR006563POX domain
PROSITE profilePS5007112.325386449IPR001356Homeobox domain
CDDcd000869.22E-12389450No hitNo description
SMARTSM003893.6E-9389453IPR001356Homeobox domain
SuperFamilySSF466892.87E-17390455IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-28392455IPR009057Homeodomain-like
PfamPF059201.1E-17406445IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MMATYYSSQG SERDSQNMYS REPSNASYPM SSALGNLLYL NNPASGPYTE FSGILQSQQN  60
CMEMPEPGHP SVMSQDSSAR ESDMLGSHQG QRSFGLVKDM KNEMLMHMMD GSQSSTADLI  120
HDDAQNGIQL DFGVLNNHGS SNIPSVQGQG LSLSLNTQIL APSLPYWSVK PDMLSPHSYH  180
DSLRVDDIRM KSMQSESSRA IRNSRYLKAA QELLDEVVNV WKNIKQKAQK EQVEAGKTDG  240
KETEGGPKSE GVSSNPQESG ANAAPELSTA EKQELQNKMA KLMAMLDEVD RKYKHYYHQM  300
QSVVSSFDMV AGPGAAKPYT AVALQTISRH FRCLKDAIND QINVIRKKLG EEESSSGKEG  360
KLTRLRYIDQ QLRQQRAFQQ YGMIPQNAWR PQRGLPENSV TILRAWLFEH FLHPYPKDSE  420
KLMLARQTGL TRSQISNWFI NARVRLWKPM IEDMYKEEIG DIEQDSNSSS DNTPRSKGKM  480
VSSEDKEDPR SCTPRVCESS QLSESRGSMR TMNAVGGGAA MGFQNEPNPD DTFMNLMLKD  540
QRSNGEEDGG LLLHNAVAQH QDENARFMAY HLAELGRYGN GNVSLTLGLQ HSSSSSLSVP  600
NAQQSFPGVG VGVGDDDIYN AAAAPLGVSV ASSDYETMNQ MDQRQRFEQS PLLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-16395452158Homeobox protein Meis1
4xrs_B4e-16395452158Homeobox protein Meis1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.14390.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G188900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443654.10.0BEL1-like homeodomain protein 7
RefseqXP_021301592.10.0BEL1-like homeodomain protein 7
TrEMBLC5YT090.0C5YT09_SORBI; Uncharacterized protein
STRINGSb08g022960.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-104BEL1-like homeodomain 6