PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.008G187500.1.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 215aa MW: 22459.1 Da PI: 11.2205

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.008G187500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	37.2	6.6e-12	96	144	3	51
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 e++r rr+ +NRe+ArrsR+RK+ +eeL+ +++ L a N++L+ +l Sobic.008G187500.1.p 96 ERRRLRRRLSNRESARRSRARKQRHLEELRGRAARLRAGNRDLAARLRG 144 7899***************************************999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	4.9E-7	93	147	No hit	No description
SMART	SM00338	2.6E-8	94	158	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.1E-8	96	144	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.208	96	159	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.13E-8	98	146	No hit	No description
PROSITE pattern	PS00036	0	101	116	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MAHQQLPMLS EWDPALDPEV EAFLSDIGFG FLGPDPTPTP TPTPPLLDVT TTTTTTTPTS 60 AATAATPPEE DTSASAPSLS AVAVADDDDG DDSLAERRRL RRRLSNRESA RRSRARKQRH 120 LEELRGRAAR LRAGNRDLAA RLRGVQARAA LVRLTNARLR AEATGLARRL AAASRALALR 180 QIYAASGGSA GGGPGAGSGT GGFFELQALA SLIA*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	95	103	ERRRLRRRL
2	96	103	RRRLRRRL
3	110	117	RRSRARKQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.008G187500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021302065.1	1e-145	bZIP transcription factor 44-like
TrEMBL	A0A1B6PEJ3	1e-143	A0A1B6PEJ3_SORBI; Uncharacterized protein
STRING	Si024325m	5e-39	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15125	19	19
Representative plant	OGRP8744	8	15

Link Out ? help Back to Top
Phytozome	Sobic.008G187500.1.p