PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G186100.3.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 399aa    MW: 41459.2 Da    PI: 6.8514
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G186100.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.3e-15207253455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            h ++ErrRR++iN++f eL +++P +     kK++Ka+iL  Av+Y+++Lq
  Sobic.008G186100.3.p 207 DHIIAERRRREKINQRFIELSTVIPGL-----KKMDKATILGDAVKYVRELQ 253
                           5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.955203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-18207262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-17208262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-12208253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.62E-16208257No hitNo description
SMARTSM003531.6E-16209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MMDRHMEDSS TFLQWAMNHL QHHQHPATAA AAAAYQQEGG AGVGARISGG AGDQEIQDAA  60
AAFPSLQVLR ASQPQTAVPA SVRVRDLTVQ VGDYGGLTNS SSSGDSPGAG AGAAMDHDAV  120
AAAWSPHTAR SRTTGLGGGS NSRPVSWNFS AASALPADDR GAVAVALPDA TAAVARVQQR  180
AASASAGRRG GSAGPSAAAT SPGPVQDHII AERRRREKIN QRFIELSTVI PGLKKMDKAT  240
ILGDAVKYVR ELQEKVKGLE EDGAAGGSGS IQSAVLVTKQ QCHMSEDEAM ASSHGGSGGA  300
DGGMQLPEIE ARLSERSVLL RIHCYSARGL LVRVISEVEQ MQLSITHTNV MPFPASTAII  360
TITAKVEEGF NATVDEIVRR INSALRQHYS SSSEETRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-13207262863Transcription factor MYC2
5gnj_B3e-13207262863Transcription factor MYC2
5gnj_E3e-13207262863Transcription factor MYC2
5gnj_F3e-13207262863Transcription factor MYC2
5gnj_G3e-13207262863Transcription factor MYC2
5gnj_I3e-13207262863Transcription factor MYC2
5gnj_M3e-13207262863Transcription factor MYC2
5gnj_N3e-13207262863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211216ERRRRE
2212217RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G186100.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0643400.0BT064340.1 Zea mays full-length cDNA clone ZM_BFc0160K20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301707.10.0transcription factor NAI1-like
RefseqXP_021301708.10.0transcription factor NAI1-like
TrEMBLA0A1B6PEI30.0A0A1B6PEI3_SORBI; Uncharacterized protein
STRINGSb08g022760.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-40bHLH family protein