PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G174650.5.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YA
Protein Properties Length: 339aa    MW: 36625.4 Da    PI: 9.091
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G174650.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.92.5e-31172228158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           ++p+YVNaKQy++I++RR +Rak+e+e++l  k+rkpylheSRh+hAlrRpRgsgGrF
  Sobic.008G174650.5.p 172 EAPIYVNAKQYDAIMRRRRARAKAERENRL-VKARKPYLHESRHQHALRRPRGSGGRF 228
                           57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-35170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.881171231IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.3E-23174196IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.5E-28174228IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.3E-23205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MMSFRSTTHD GFVGHAAVNG AGAPVPWWAG APMLCGEPLG LGRPVVAAFS PEDHCRDGRF  60
QVLQGPPLDP LVPSLKAPVA HQQQTEKGLS AELLNLSVAH QGKGKKGSEH SATVALQSPF  120
AIYNGRFELG LGQSMISADN SYADQHYGLI SPYPMGATPG GRMLIPLNMP TEAPIYVNAK  180
QYDAIMRRRR ARAKAERENR LVKARKPYLH ESRHQHALRR PRGSGGRFLN TKKESDGKDA  240
GGGSKATFSN PLMRQVASPS SEIQHSDLGN PSSVSSLSGS EVSSMYDRED MDHYHSFDHL  300
RTPFFTPLTS IMDGDHGVVG NPFKWAAASE VCCDLLKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A2e-18172230261HAPB protein
4g92_A2e-18172230261HAPB protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.12530.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G174650.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0338110.0BT033811.1 Zea mays full-length cDNA clone ZM_BFc0155E11 mRNA, complete cds.
GenBankBT0678270.0BT067827.1 Zea mays full-length cDNA clone ZM_BFc0168D11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443581.20.0uncharacterized protein LOC8071483 isoform X2
TrEMBLA0A1Z5R7A80.0A0A1Z5R7A8_SORBI; Uncharacterized protein
STRINGSb08g021910.11e-149(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.33e-27nuclear factor Y, subunit A10