PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G174100.1.p | ||||||||
Common Name | Sb08g021870, SORBIDRAFT_08g021870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 1164aa MW: 131375 Da PI: 8.7109 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 45.4 | 1.6e-14 | 1024 | 1084 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnh 58 +Dgy+WrK Gq+++++ +fpr YY C+++ +C++ k v++ ++ p ++ ++Y ++H++ Sobic.008G174100.1.p 1024 EDGYQWRKSGQRMINNERFPRCYYSCAYRrdrKCRAIKLVQQYNDgAPPLFAVKYCNHHTC 1084 7***************************9999*********988424789*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52540 | 1.13E-50 | 184 | 454 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Gene3D | G3DSA:3.40.50.300 | 4.6E-12 | 203 | 357 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
Pfam | PF00931 | 1.3E-48 | 216 | 481 | IPR002182 | NB-ARC |
PRINTS | PR00364 | 9.6E-14 | 221 | 236 | No hit | No description |
PRINTS | PR00364 | 9.6E-14 | 293 | 307 | No hit | No description |
PRINTS | PR00364 | 9.6E-14 | 389 | 403 | No hit | No description |
SuperFamily | SSF52058 | 2.55E-20 | 551 | 920 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 5.6E-17 | 553 | 758 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PRINTS | PR00364 | 9.6E-14 | 691 | 707 | No hit | No description |
Gene3D | G3DSA:3.80.10.10 | 5.6E-17 | 804 | 922 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:2.20.25.80 | 4.4E-16 | 1010 | 1084 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.11E-16 | 1016 | 1084 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.1E-17 | 1023 | 1086 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.022 | 1024 | 1086 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.7E-17 | 1024 | 1084 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043531 | Molecular Function | ADP binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1164 aa Download sequence Send to blast |
MGMEDPTATA SLDGTISKLP GKLDRLLRHG TRRKKRLMHH VCTLPKGVVD EVPLIKADLE 60 KILAISSDLE DDQAMTARCW RKEVRELSYD MEDFVDQYEH AHAVSCSRSM IRGRKIATQQ 120 RRKSKISLPW LREKLRRRLW MANKTREFSA RTQEALQRHS LYNLDAVAGA SASSRRTCAY 180 SDPAWNSTPC GEEDAYVGIN DAMEELLMMM HDDHGHQKLK VVSIVGFGGI GKTTLATELY 240 HKLGHQFECR AFVRTSHKPD MRRIFISMLS QVRPHQPPDN WTVHSLISTI RTHLQDKRYL 300 IIVEDVCTAS TWDIVKYALP DSNCRSTILI TTEIEDLALQ SCDHDPKYVY KMKPLGEDNS 360 RKLFFGLVFG QHECPLELRE ISCNIISKCG GLPLAIVTVA SILSSQPGVQ GQWDFVNKSI 420 GESLLTNPTW EGMKQVLDLS YNNLPQQLKA CILYTSLYEE DIIIWKDDLV NQWIAEGFIQ 480 TTGGQDKKQI GRSFFDRLIS GKLILPVDIN RNGEVLSCVV HRMVLNLVIR DKSMEENFVT 540 AIHHSQADTM LADKVRRLSL QFGNAEDAIP PSNMRLSHVR TLAFSGVFKC LPSIEQFRLL 600 QVLILHFWGD KDIISFDITR ISELFRLRYL KVTSNVTLEL GTQMRCLQSL ETLAIDARVS 660 AVPSDIVQLP GLLHLRLPAE TNLPNGIGHM TSLRTLGYFD LSSNSLENVQ SLSMLTNLGD 720 LQLTCSTKEP ESLNMKTPFL LMNMILEKLS NLKSLALVPT RTFSYYTKSI DDDAGATCIT 780 ISDGFSTLSS APALLQGFEV SPRICIFFCT PKWIGQLHKL SILKFGVRKI DRDGVDVLRG 840 LPALAVLSLY VHTKPAARIV IGKIGFSVIK YFKLKCCDPC LEFEEGAMPN LRRLKLAFNA 900 CNADRPSTMP VGIKYLSELK EVSAKICGAE ESHTRTAQLA FRDVIRVHAG CQSVNVQCVK 960 QIISSEDDQS SQSSMKTAKY PRIQYLPSPA QAPGRNQNRH RRWPDSIPRE QTTVRQMLTP 1020 TPYEDGYQWR KSGQRMINNE RFPRCYYSCA YRRDRKCRAI KLVQQYNDGA PPLFAVKYCN 1080 HHTCVPEANP ARRSRGRNKE LPLGFGTSVA GAEQGTRLQI RNSYRGDSSS SESSRAPQSS 1140 DMIVFYDSTS EETMYVLGPG SWY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j5t_C | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j5t_F | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j5t_G | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j5t_L | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j5t_O | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j5u_A | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j5v_A | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j5w_A | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j6i_C | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j6i_F | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j6i_G | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j6i_L | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6j6i_O | 5e-39 | 187 | 825 | 151 | 768 | Disease resistance RPP13-like protein 4 |
6s2p_N | 2e-39 | 189 | 535 | 3 | 347 | NRC1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G174100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021321847.1 | 0.0 | putative disease resistance RPP13-like protein 3 | ||||
TrEMBL | A0A1B6PEB4 | 0.0 | A0A1B6PEB4_SORBI; Uncharacterized protein | ||||
STRING | Sb08g021870.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2751 | 19 | 33 |
Representative plant | OGRP12071 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66600.1 | 3e-14 | ABA overly sensitive mutant 3 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G174100.1.p |
Entrez Gene | 8084427 |