PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.008G174100.1.p
Common NameSb08g021870, SORBIDRAFT_08g021870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 1164aa    MW: 131375 Da    PI: 8.7109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.008G174100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY45.41.6e-1410241084258
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS CS
                  WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnh 58  
                            +Dgy+WrK Gq+++++ +fpr YY C+++   +C++ k v++ ++  p ++ ++Y ++H++
  Sobic.008G174100.1.p 1024 EDGYQWRKSGQRMINNERFPRCYYSCAYRrdrKCRAIKLVQQYNDgAPPLFAVKYCNHHTC 1084
                            7***************************9999*********988424789*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.13E-50184454IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.6E-12203357IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009311.3E-48216481IPR002182NB-ARC
PRINTSPR003649.6E-14221236No hitNo description
PRINTSPR003649.6E-14293307No hitNo description
PRINTSPR003649.6E-14389403No hitNo description
SuperFamilySSF520582.55E-20551920IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.6E-17553758IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003649.6E-14691707No hitNo description
Gene3DG3DSA:3.80.10.105.6E-17804922IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:2.20.25.804.4E-1610101084IPR003657WRKY domain
SuperFamilySSF1182908.11E-1610161084IPR003657WRKY domain
SMARTSM007747.1E-1710231086IPR003657WRKY domain
PROSITE profilePS5081114.02210241086IPR003657WRKY domain
PfamPF031065.7E-1710241084IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1164 aa     Download sequence    Send to blast
MGMEDPTATA SLDGTISKLP GKLDRLLRHG TRRKKRLMHH VCTLPKGVVD EVPLIKADLE  60
KILAISSDLE DDQAMTARCW RKEVRELSYD MEDFVDQYEH AHAVSCSRSM IRGRKIATQQ  120
RRKSKISLPW LREKLRRRLW MANKTREFSA RTQEALQRHS LYNLDAVAGA SASSRRTCAY  180
SDPAWNSTPC GEEDAYVGIN DAMEELLMMM HDDHGHQKLK VVSIVGFGGI GKTTLATELY  240
HKLGHQFECR AFVRTSHKPD MRRIFISMLS QVRPHQPPDN WTVHSLISTI RTHLQDKRYL  300
IIVEDVCTAS TWDIVKYALP DSNCRSTILI TTEIEDLALQ SCDHDPKYVY KMKPLGEDNS  360
RKLFFGLVFG QHECPLELRE ISCNIISKCG GLPLAIVTVA SILSSQPGVQ GQWDFVNKSI  420
GESLLTNPTW EGMKQVLDLS YNNLPQQLKA CILYTSLYEE DIIIWKDDLV NQWIAEGFIQ  480
TTGGQDKKQI GRSFFDRLIS GKLILPVDIN RNGEVLSCVV HRMVLNLVIR DKSMEENFVT  540
AIHHSQADTM LADKVRRLSL QFGNAEDAIP PSNMRLSHVR TLAFSGVFKC LPSIEQFRLL  600
QVLILHFWGD KDIISFDITR ISELFRLRYL KVTSNVTLEL GTQMRCLQSL ETLAIDARVS  660
AVPSDIVQLP GLLHLRLPAE TNLPNGIGHM TSLRTLGYFD LSSNSLENVQ SLSMLTNLGD  720
LQLTCSTKEP ESLNMKTPFL LMNMILEKLS NLKSLALVPT RTFSYYTKSI DDDAGATCIT  780
ISDGFSTLSS APALLQGFEV SPRICIFFCT PKWIGQLHKL SILKFGVRKI DRDGVDVLRG  840
LPALAVLSLY VHTKPAARIV IGKIGFSVIK YFKLKCCDPC LEFEEGAMPN LRRLKLAFNA  900
CNADRPSTMP VGIKYLSELK EVSAKICGAE ESHTRTAQLA FRDVIRVHAG CQSVNVQCVK  960
QIISSEDDQS SQSSMKTAKY PRIQYLPSPA QAPGRNQNRH RRWPDSIPRE QTTVRQMLTP  1020
TPYEDGYQWR KSGQRMINNE RFPRCYYSCA YRRDRKCRAI KLVQQYNDGA PPLFAVKYCN  1080
HHTCVPEANP ARRSRGRNKE LPLGFGTSVA GAEQGTRLQI RNSYRGDSSS SESSRAPQSS  1140
DMIVFYDSTS EETMYVLGPG SWY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C5e-39187825151768Disease resistance RPP13-like protein 4
6j5t_F5e-39187825151768Disease resistance RPP13-like protein 4
6j5t_G5e-39187825151768Disease resistance RPP13-like protein 4
6j5t_L5e-39187825151768Disease resistance RPP13-like protein 4
6j5t_O5e-39187825151768Disease resistance RPP13-like protein 4
6j5u_A5e-39187825151768Disease resistance RPP13-like protein 4
6j5v_A5e-39187825151768Disease resistance RPP13-like protein 4
6j5w_A5e-39187825151768Disease resistance RPP13-like protein 4
6j6i_C5e-39187825151768Disease resistance RPP13-like protein 4
6j6i_F5e-39187825151768Disease resistance RPP13-like protein 4
6j6i_G5e-39187825151768Disease resistance RPP13-like protein 4
6j6i_L5e-39187825151768Disease resistance RPP13-like protein 4
6j6i_O5e-39187825151768Disease resistance RPP13-like protein 4
6s2p_N2e-391895353347NRC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.008G174100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021321847.10.0putative disease resistance RPP13-like protein 3
TrEMBLA0A1B6PEB40.0A0A1B6PEB4_SORBI; Uncharacterized protein
STRINGSb08g021870.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27511933
Representative plantOGRP1207124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.13e-14ABA overly sensitive mutant 3