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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.008G172200.1.p | ||||||||
Common Name | Sb08g021690, SORBIDRAFT_08g021690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TCP | ||||||||
Protein Properties | Length: 303aa MW: 31236.9 Da PI: 7.0992 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 107.4 | 2.1e-33 | 43 | 156 | 1 | 101 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssas 71 aag+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+ieWL+++a +ai+ l+++ Sobic.008G172200.1.p 43 AAGGKDRHSKVVTARGLRDRRVRLSVPTAIQFYDIQDRLGVDQPSKAIEWLIRAAAAAIDGLPSLdcsfalptaagaasppgaA----- 126 6899*************************************************************9999888766543333320..... PP TCP 72 eceaesssssasnsssg.....kaaksaakskksq 101 +++++s++++s+s+ +a+++ + +q Sobic.008G172200.1.p 127 ---DDAEVSTSDTSKSSvlslaNASAD--NAAAQQ 156 ...222222222222223332211111..111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.7E-32 | 45 | 150 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.515 | 46 | 104 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEEVAVAAGM ERAAGCKRPR GALDGGGSAS AAAWRTCRVA RAAAGGKDRH SKVVTARGLR 60 DRRVRLSVPT AIQFYDIQDR LGVDQPSKAI EWLIRAAAAA IDGLPSLDCS FALPTAAGAA 120 SPPGAADDAE VSTSDTSKSS VLSLANASAD NAAAQQASHA YNGNAAGGGG AFAELILHCS 180 PNDSKPVQQQ PTLAYYAAQP PSAHAASALS SFETMPHFSF LQEQPHPAVA FDRGTLQSNA 240 AVAAPLWPTS QQACLLQRFA ASPADATGLP FFLGGSAAAS PMVPDNSEPR LQLWDFKQER 300 KT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-23 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 9e-23 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.008G172200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726804 | 0.0 | KJ726804.1 Zea mays clone pUT3063 TCP transcription factor (TCP38) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002442549.1 | 0.0 | transcription factor PCF8 | ||||
Refseq | XP_021301595.1 | 0.0 | transcription factor PCF8 | ||||
Refseq | XP_021301596.1 | 0.0 | transcription factor PCF8 | ||||
Swissprot | A2ZMR9 | 2e-93 | PCF8_ORYSI; Transcription factor PCF8 | ||||
TrEMBL | C5YS27 | 0.0 | C5YS27_SORBI; Uncharacterized protein | ||||
STRING | Sb08g021690.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11553 | 26 | 38 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 1e-29 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.008G172200.1.p |
Entrez Gene | 8084416 |